RnoINT0121198 @ rn6
Intron Retention
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117300028-117300280:+
Coord C1 exon
chr8:117300028-117300081
Coord A exon
chr8:117300082-117300219
Coord C2 exon
chr8:117300220-117300280
Length
138 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AATTTCTGTGCTTTTCTTAGGTG
3' ss Score
9.07
Exon sequences
Seq C1 exon
GTCCTCCACCTGCTGGGGCCCAAAATGGAAGCTGATCTGGAGAAGAAGCCCAAG
Seq A exon
GTGAGGCTAGGAGTTGTCCAAGCTAACTGGGGTGAAATAGAGAGAGACAGACTTACAGCTGGAGAAGGGAGTGTCTGAACCCATTTCATCAGCAACTCTTTCCCAGAATGAATGATGCAATTTCTGTGCTTTTCTTAG
Seq C2 exon
GTGGCAAAGGCACGGCTGGAAGAAACAGACAGGAAGACAGCAAAAGATGTGGTGGAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.476
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCACCTGCTGGGG
R:
CGTTCTCCACCACATCTTTTGC
Band lengths:
115-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]