HsaINT0135716 @ hg38
Intron Retention
Gene
ENSG00000172053 | QARS
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
Coordinates
chr3:49102205-49102472:-
Coord C1 exon
chr3:49102419-49102472
Coord A exon
chr3:49102266-49102418
Coord C2 exon
chr3:49102205-49102265
Length
153 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GCACCTGGGGCTTCTTTCAGGTG
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTCCTCCACCTTCTGGGCCCCAAGTTGGAGGCTGATCTGGAGAAGAAGTTCAAG
Seq A exon
GTAGGGATGGGCATGGCCCTGAGTCCCTGAGGGTGAGGTGAGGTATGGTGAGACTTCAGGCTGGGGAAGGAAGTGTCTGACCACAGGGATCCCAAGACCCTATCCAAGAGAAAATTTGATGCCATTTTCTGAAGCACCTGGGGCTTCTTTCAG
Seq C2 exon
GTGGCAAAAGCTCGGCTAGAAGAAACAGACCGGAGGACGGCAAAGGATGTGGTGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053:ENST00000306125:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.572
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCACCTTCTGGGCC
R:
ATTCTCCACCACATCCTTTGCC
Band lengths:
114-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development