HsaINT0135716 @ hg19
Intron Retention
Gene
ENSG00000172053 | QARS
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49139638-49139905:-
Coord C1 exon
chr3:49139852-49139905
Coord A exon
chr3:49139699-49139851
Coord C2 exon
chr3:49139638-49139698
Length
153 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GCACCTGGGGCTTCTTTCAGGTG
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTCCTCCACCTTCTGGGCCCCAAGTTGGAGGCTGATCTGGAGAAGAAGTTCAAG
Seq A exon
GTAGGGATGGGCATGGCCCTGAGTCCCTGAGGGTGAGGTGAGGTATGGTGAGACTTCAGGCTGGGGAAGGAAGTGTCTGACCACAGGGATCCCAAGACCCTATCCAAGAGAAAATTTGATGCCATTTTCTGAAGCACCTGGGGCTTCTTTCAG
Seq C2 exon
GTGGCAAAAGCTCGGCTAGAAGAAACAGACCGGAGGACGGCAAAGGATGTGGTGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-QARS:NM_005051:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.595
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(21.5=100)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCACCTTCTGGGCC
R:
ATTCTCCACCACATCCTTTGCC
Band lengths:
114-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)