Special

HsaINT0135716 @ hg19

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49139638-49139905:-
Coord C1 exon
chr3:49139852-49139905
Coord A exon
chr3:49139699-49139851
Coord C2 exon
chr3:49139638-49139698
Length
153 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
GCACCTGGGGCTTCTTTCAGGTG
3' ss Score
7.49
Exon sequences
Seq C1 exon
GTCCTCCACCTTCTGGGCCCCAAGTTGGAGGCTGATCTGGAGAAGAAGTTCAAG
Seq A exon
GTAGGGATGGGCATGGCCCTGAGTCCCTGAGGGTGAGGTGAGGTATGGTGAGACTTCAGGCTGGGGAAGGAAGTGTCTGACCACAGGGATCCCAAGACCCTATCCAAGAGAAAATTTGATGCCATTTTCTGAAGCACCTGGGGCTTCTTTCAG
Seq C2 exon
GTGGCAAAAGCTCGGCTAGAAGAAACAGACCGGAGGACGGCAAAGGATGTGGTGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-QARS:NM_005051:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.595
Domain overlap (PFAM):

C1:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(21.5=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTCCACCTTCTGGGCC
R:
ATTCTCCACCACATCCTTTGCC
Band lengths:
114-267
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development