Special

HsaINT0135715 @ hg38

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:HGNC:9751]
Coordinates
chr3:49102419-49103409:-
Coord C1 exon
chr3:49103345-49103409
Coord A exon
chr3:49102473-49103344
Coord C2 exon
chr3:49102419-49102472
Length
872 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGATTCTGGTCTCTGCTCAGGTC
3' ss Score
8.82
Exon sequences
Seq C1 exon
GAGAGGCTCGGGCTGTGCTGAAGTGGGCAGATGGCAAAATGATCAAGAATGAAGTGGACATGCAG
Seq A exon
GTGAGCGTGCTTCACTAAGCTGAAGCTGGCAAAGACTCTGGCATGAACAGAGCCTGGAATCCACTAAGGGATAAAAGGCAGGAAGAGGGCTGGGCATGGTGGCTCACGCTTCTGATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATTACTTGAGCCCAGGAGTTCAAGACCAGCCTGAGCAACATATTGAGAACTCCTCTCTACAGAAAATTTAAAAATTAGCCAGACATGGTGGTGTATACCTGTAGTCCCAGCAATTTGTGGGGCTGTGGTGGGAAGATTGCTTGAATCTAAGAGATCAAGGCTGCAGTAAGCTCTGATTGCACCACTGCACTCCATCCTGGAGTACAGAATGAGACCCTGTCTCAAAATCAACAACAATAAAAAAAGGTGGGAGGGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAACACTATTGGGAGGCTGAGGTGGGCAGATCACCTGAGGTCAGGAGTTTGAGAACAGCCTGGCCAACATGGTGAAACCCCATCTCTACAAAAAGTACAAAAATTAGCTGGGTGTGGTGGCGGGCACATGCAGTCCCAGGTACTCAGAAGGGCTGAGGTAGGAAAATCGCTTGAATCCAGGAGGCGGAGGTTGCAGTGAGCGGAGACTGTGCCATTGCATTCCAGCCTGGGCAACATGAGCAAGACTCCAGTCTGGGCAACAAGAGCAAGAGCATTTTAAGCTAGCAGACCCACATGAGAAGAGATGGGATGGGCTAGGTAGGTTTTTTCAGTCAGTGCTGGTAGATAGGCCAGGAAGCCTTGGGTTGGTGGGTAGGATCAGTCAGGGGCTCCTTGAAAGAGGATACTCCTGCCTCTGCCTGATTCTGGTCTCTGCTCAG
Seq C2 exon
GTCCTCCACCTTCTGGGCCCCAAGTTGGAGGCTGATCTGGAGAAGAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053:ENST00000306125:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0455810=tRNA_synt_1c_R1=PD(14.5=54.5),PF0455710=tRNA_synt_1c_R2=PU(8.6=36.4)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development