HsaINT0135715 @ hg19
Intron Retention
Gene
ENSG00000172053 | QARS
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49139852-49140842:-
Coord C1 exon
chr3:49140778-49140842
Coord A exon
chr3:49139906-49140777
Coord C2 exon
chr3:49139852-49139905
Length
872 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGATTCTGGTCTCTGCTCAGGTC
3' ss Score
8.82
Exon sequences
Seq C1 exon
GAGAGGCTCGGGCTGTGCTGAAGTGGGCAGATGGCAAAATGATCAAGAATGAAGTGGACATGCAG
Seq A exon
GTGAGCGTGCTTCACTAAGCTGAAGCTGGCAAAGACTCTGGCATGAACAGAGCCTGGAATCCACTAAGGGATAAAAGGCAGGAAGAGGGCTGGGCATGGTGGCTCACGCTTCTGATCCCAGCACTTTGGGAGGCTGAGGCAGGAGGATTACTTGAGCCCAGGAGTTCAAGACCAGCCTGAGCAACATATTGAGAACTCCTCTCTACAGAAAATTTAAAAATTAGCCAGACATGGTGGTGTATACCTGTAGTCCCAGCAATTTGTGGGGCTGTGGTGGGAAGATTGCTTGAATCTAAGAGATCAAGGCTGCAGTAAGCTCTGATTGCACCACTGCACTCCATCCTGGAGTACAGAATGAGACCCTGTCTCAAAATCAACAACAATAAAAAAAGGTGGGAGGGGGCTGGGCATGGTGGCTCACACCTGTAATCCCAACACTATTGGGAGGCTGAGGTGGGCAGATCACCTGAGGTCAGGAGTTTGAGAACAGCCTGGCCAACATGGTGAAACCCCATCTCTACAAAAAGTACAAAAATTAGCTGGGTGTGGTGGCGGGCACATGCAGTCCCAGGTACTCAGAAGGGCTGAGGTAGGAAAATCGCTTGAATCCAGGAGGCGGAGGTTGCAGTGAGCGGAGACTGTGCCATTGCATTCCAGCCTGGGCAACATGAGCAAGACTCCAGTCTGGGCAACAAGAGCAAGAGCATTTTAAGCTAGCAGACCCACATGAGAAGAGATGGGATGGGCTAGGTAGGTTTTTTCAGTCAGTGCTGGTAGATAGGCCAGGAAGCCTTGGGTTGGTGGGTAGGATCAGTCAGGGGCTCCTTGAAAGAGGATACTCCTGCCTCTGCCTGATTCTGGTCTCTGCTCAG
Seq C2 exon
GTCCTCCACCTTCTGGGCCCCAAGTTGGAGGCTGATCTGGAGAAGAAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-QARS:NM_005051:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=PD(7.4=54.5),PF0455710=tRNA_synt_1c_R2=PU(10.3=36.4)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)