MmuINT1027857 @ mm10
Intron Retention
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108509441-108510148:+
Coord C1 exon
chr9:108509441-108509505
Coord A exon
chr9:108509506-108510094
Coord C2 exon
chr9:108510095-108510148
Length
589 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GTCTGTATCTATCTGCTCAGGTG
3' ss Score
8
Exon sequences
Seq C1 exon
GAGAGGCTCGGGCTGCGCTCAGATGGGCAGACGGCAAAATGATCAAGAACGAGGTGGATATGCAG
Seq A exon
GTGGGCACCTCCCTAAGAAGATGCTCCGGAGATAAAGGGAACGAGACCCTGTCCTTCTTCTGACAGGGAAAGTGGAGCCCAGTGTGGAGGGAGTAGCGCTTAACTTGGGTCTCTGAGTGAGGGTGACCCCCTTTCTTGGGAAGCTGCTTCCTCCTCTCACATGTGCATGCTGTGGCCTTTATTGATATCTGGCAAAGAATCACAAGAGGACGATGACTGAGGTACATTGTTTATCGTGATGCTGGGCCCACGTTATTTATCTGTAAATGGCAGCACTCGTTCTCTGGGCCCAGGATAAGTCCTCAGAAAGGAAAAAGCATTCAAGGCCAGTAGAACCATGTGAAGAAGCCAGCTGGGCAGAGGCAGGTGGATCTCTATGAGTACTAATCTGGCCCTCATAGTGAGTTCCAGACCAGCCGAGGATATATAGTAAGATCCCATGTCAAACAGCAAAACATGTGATGAGATACAGCGGGATGGGGTGGATAGGTTGGCTGGCAGAAAAGCCAGGAAGCCCTTGGTTGTCGGGGAAGGACTCCATCAGGAGATTCTTGAGAGAGTACACCCTTGTCTGTATCTATCTGCTCAG
Seq C2 exon
GTGCTTCACCTTTTGGGGCCCAAGATGGAAGCTGATCTGGTGAAGAAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604:ENSMUST00000006838:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=PD(7.4=54.5),PF0455710=tRNA_synt_1c_R2=PU(16.7=36.4)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types