Special

HsaINT0135714 @ hg19

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49140778-49141139:-
Coord C1 exon
chr3:49141064-49141139
Coord A exon
chr3:49140843-49141063
Coord C2 exon
chr3:49140778-49140842
Length
221 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CCTTGTGCCTATGCTTCTAGGAG
3' ss Score
7.9
Exon sequences
Seq C1 exon
GTGGAGGCTGCTATTAACAGGCACCGGCCCCAGCTCCTGGTGGAACGTTACCATTTCAACATGGGGCTGCTGATGG
Seq A exon
GTGAGCAGGGCCTGGAACGGGGCTATATTGTTCTCTCTGGTCATGCCTTTTCTTCTGGGCACGAGTGAGAAGGAGGTGGGGGAAGGAACAGGAGTGACTTAAAGTGGTCTGGCTGGGCTCAGGCTCTGGTTCTGGTGGTCAGCCAGGACCTTTCCTTGGGAAAGAGGTGGGGGGAGTACTCTTTTTTGCCTTTCTGCAGCTCCTTGTGCCTATGCTTCTAG
Seq C2 exon
GAGAGGCTCGGGCTGTGCTGAAGTGGGCAGATGGCAAAATGATCAAGAATGAAGTGGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-QARS:NM_005051:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.018 A=NA C2=0.110
Domain overlap (PFAM):

C1:
PF0455810=tRNA_synt_1c_R1=FE(15.3=100)
A:
NA
C2:
PF0455810=tRNA_synt_1c_R1=PD(7.4=54.5),PF0455710=tRNA_synt_1c_R2=PU(10.3=36.4)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
ALTERNATIVE
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGCTGCTATTAACAGGC
R:
CTGCATGTCCACTTCATTCTTGA
Band lengths:
140-361
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development