GgaINT0022764 @ galGal3
Intron Retention
Description
NA
Coordinates
chr12:2483397-2483595:+
Coord C1 exon
chr12:2483397-2483459
Coord A exon
chr12:2483460-2483562
Coord C2 exon
chr12:2483563-2483595
Length
103 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AACCATCCCCCTTCGAGCAGACC
3' ss Score
4.8
Exon sequences
Seq C1 exon
ATCTCCTGGCCGGCACCCAGGGCGCAGGTGGAGCACTGCCGGCTGGCAGGCAAGGACGTGGAG
Seq A exon
GTGAGCGGGGCCGGGAAGCCCTGCATGTGGCTTCTGGGCACTGAGAGCTGAGCCCCAGCACCGCGGGTGTGCCCGCCACTAACAACCATCCCCCTTCGAGCAG
Seq C2 exon
ACCGAGTGTGCCAACTTCATCCGCCTCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203:ENSGALT00000005073:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
NA
C2:
PF0140314=Sema=FE(2.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]