GgaINT0022881 @ galGal3
Intron Retention
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9331549-9331759:+
Coord C1 exon
chr12:9331549-9331584
Coord A exon
chr12:9331585-9331714
Coord C2 exon
chr12:9331715-9331759
Length
130 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTGTCTTCCTCCTGCACCAGGGA
3' ss Score
8.3
Exon sequences
Seq C1 exon
GGTCCACGGGGACCTCCAGGCGAGCAAGGCAGGAAG
Seq A exon
GTGAGTGGTGAGGGGATGCTCCCATGATGCACTCCAATCCCCCAGCTCCTCCATGGGGAGAAAAGGGATGTAGGTGCTGTGCTACCCCCTGTGCCAGCCACCAACACCATCTGTCTTCCTCCTGCACCAG
Seq C2 exon
GGAGAGCGTGGGGCACCAGGCGAGCTGGGAGAGACGGGCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.7=100)
A:
NA
C2:
PF0139113=Collagen=FE(22.6=100),PF0139113=Collagen=PU(12.7=53.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]