GgaINT0022902 @ galGal3
Intron Retention
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9336096-9336271:+
Coord C1 exon
chr12:9336096-9336134
Coord A exon
chr12:9336135-9336235
Coord C2 exon
chr12:9336236-9336271
Length
101 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTCATGTCCTTTTATTGTAGAAC
3' ss Score
8.52
Exon sequences
Seq C1 exon
GGGCGGCCTGGCGTCAGCGGAGACCCTGGGACTGCAGTG
Seq A exon
GTGAGTTCCCCACTGGGCTGGGACATCAGCGCCGGAGACCCCAGAGCCCCAGTGGTAGAAGCAGCGCAATAGGCTTCCTTTCTCATGTCCTTTTATTGTAG
Seq C2 exon
AACATCGAACGTAGCCTGGAAGCCCTCGGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.833
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(26.1=100)
A:
NA
C2:
PF0139113=Collagen=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]