GgaINT0022914 @ galGal3
Intron Retention
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9338949-9339240:+
Coord C1 exon
chr12:9338949-9338993
Coord A exon
chr12:9338994-9339207
Coord C2 exon
chr12:9339208-9339240
Length
214 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CGTGGGTTCTGTCCCCACAGGGT
3' ss Score
11.24
Exon sequences
Seq C1 exon
GGTGCTGCTGGCCCCCCGGGGAGCCAGGGTCCATCTGGGATGAAG
Seq A exon
GTATGTCATTGCCATTGTCATCATCACCTTCATCATCTCCATGTTTGGTCTGGTGCAGGGAAGTGATGCCATGCCAGCATTGAGGGCTGCAGGGAGAACTTAGGGTCTGACCCCTCCTAGAGGCACTCAGGGCTCAGGGGATATAGGGGCACAGCTGTGATGGTGGTGGCAGGGAAATGGAGCAGCGGGACTGACGTGGGTTCTGTCCCCACAG
Seq C2 exon
GGTGATCCAGGGGAACCTGGTGCCAGCATCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.2=100),PF0139113=Collagen=PU(10.1=53.3)
A:
NA
C2:
PF0139113=Collagen=PD(12.1=72.7),PF0139113=Collagen=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]