GgaINT0022915 @ galGal3
Intron Retention
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9339208-9339412:+
Coord C1 exon
chr12:9339208-9339240
Coord A exon
chr12:9339241-9339349
Coord C2 exon
chr12:9339350-9339412
Length
109 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
CCCCGCTGTTACCCTTGCAGGGA
3' ss Score
10.87
Exon sequences
Seq C1 exon
GGTGATCCAGGGGAACCTGGTGCCAGCATCCGG
Seq A exon
GTGAGCCTCCCCAAAACCAACCCCTTCCTGGTGACAGCTGAGCTCCCGCTGTCCCAGAGAGATGTACCAGCATGGCACCTCCTTCCTGACCCCGCTGTTACCCTTGCAG
Seq C2 exon
GGATTGCCTGGTCCCCAGGGCAGCATGGGGCTGCCTGGCCCCCCAGGACCCCCTGGTCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:69
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.1=72.7),PF0139113=Collagen=FE(12.7=100)
A:
NA
C2:
PF0139113=Collagen=FE(25.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]