GgaINT0022949 @ galGal3
Intron Retention
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9346191-9347511:+
Coord C1 exon
chr12:9346191-9346370
Coord A exon
chr12:9346371-9346994
Coord C2 exon
chr12:9346995-9347511
Length
624 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
NNNNTCGCCTCCCCCCACAGGTG
3' ss Score
0
Exon sequences
Seq C1 exon
CCGAGCCCTGCACCCAGCCCGTGGAGGAGGGGGGCTGCCAGCGGTACACGCTGCGCTGGTACTACAACCAAAGAGCCGCCGAGTGCCGGCCCTTCGTCTACAGTGGCTGCCAGGGCAACCTCAACCGCTTCGGCAGCCAGGAGGAGTGTGAGCTCCGCTGCAGGCAGCGCGTGGGGACAG
Seq A exon
GTGGGCACAGCACAGCTATCAGCGCTGGCGGCATCGCACCTGGTGCCGTGCTTGGTGCCACCTCGCCTCCCCCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCCTCCCCCCACAG
Seq C2 exon
GTGCTGGCAGCGGGGAAGGACGGCGGCCGGAGGCGTAGCGTGGCGATCCCTGCAGGAACGTGGTGCTATTTCTGACGTCTCTTCTTGTTGCTCATGGGTCTTTCCCTTCATGTCGGTTCTATTTCCCGTTAAAGGTGAAATTTCTATCAAATGGGAACACGACCTCCCCATACGCCTTTTATCTGCTTTCCAAACCAGAGCTCTCTTGGGGTGTTGCCTTAATTTTTTAACTTATTTGCTGCCAAAGGGACAGCTCTTGGCCCCATGTTCCTTCTTTGGCCGCCCAGAGCTGAGAGTGGGCACGGTTGGGCCCCTTCCCCAAACCCAACGCCTCAAATCCCCAAGGCTGTGGGCTGCCCTCGTCTCCCTCTTGGGCTCCGTGCAACCTGCTCCATTTGAATGAATTTCACCTTCACCCCACCTGGGACCCGGTAACCCTTTTGGGGGGCGATGGTTTGGCAGAGAACTGCAGGAGGGATGGAGGCTTTCTCCATGTGCTGCCCTCCGGCTCGCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811:ENSGALT00000009331:103
Average complexity
IR
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACACGCTGCGCTGGTACTA
R:
ACCCCAAGAGAGCTCTGGTTT
Band lengths:
348-972
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]