GgaINT0028077 @ galGal3
Intron Retention
Description
NA
Coordinates
chr10:8651815-8653954:+
Coord C1 exon
chr10:8651815-8652059
Coord A exon
chr10:8652060-8653724
Coord C2 exon
chr10:8653725-8653954
Length
1665 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTCTCTCCCTTTCCATCTAGTAT
3' ss Score
9.09
Exon sequences
Seq C1 exon
ATGGTAGTAAAATGTTGTGTGTGGTCGCTCCTGTCACATCAGTTGCAGTTTCATTTCAAATAGTATGTTTTGCTAGAATAATAACTAACAAATCATTCCCATTGCAAATTCTGACTTTTGTATGGTGTTTTACAGACACAAATACTGCATCAAGCAACATTAAGAATGGAGGGCCGTTTCCACGAGCTTGTCCAAAGTGCAATATTCATTTCAATCTTATGGATCCTCTAAAAAATCATATGAAG
Seq A exon
GTAAAATAATTTGAGGATGATGAACATTATAAACTTAAGTGGGCTTCTGGTTATGGAAAATGATTCAGTTTGAAGATAGTCTGGCTTCTGTCTCTGATTAGGCAGGGCTGAAGTATTGTGAAGTCAGATAAGGAACGGAGCCCTAAGTCTTGTTATTTTGGGCATTATTTTTACCAGTGAAATGAGGTACCTATGCTGGCTCTGTGAATTCTCTCTCCCATAGCTATGATTTTGTGAACCTTTGGCCAAATAACAAGTGAATTTGATGAAGATAATTGCCTGTAGTAGCAATGCAAGTTGACCCACTAGTACTGCTAGTAGCAGCCTGTTGACTCACATCTGTGGTAGGTGACTACTAAGGCAAAGATAACCTTGTAAATTTAACTTTTTTTCCTTTATATATCATATGGTAACTTAAAAAGTCTTCTGAGGGGAAAAGGCTGATTTGTAGTTCATACTTAAAATGATAAACAAAATGTTCATGAACTATGCATCCATTACTCTTTATGAAGCCTACTTGTCATTGTTTCCAGAAACATTATGTCCTGGAAAATGCTTTTTTTTATCGTTTGGCAGAGATTAGCACAGTTCTCAGGTGTATGTATTCCTTTCCAGAGAAGCAGAAATGTCTTTGCATACAATGAATAACTCATGCAAAAAGCTGTATGAATTACTTTGGAATAGAAATTTTTGATGCTCTCAATTGCTGTTAACACTAATCACTGTAGTTTGAAGGATTGAAGATAAATGATAGCTAGTGTCCTGTTTAGCTTCAAAACACAATTAAGAAATGTACTATTAAGAAATGTTATCTTTCTCTAATCATTTTTTGTAATGAATTGCTTTTGCATTGGTACTTTAAACAAATAAAAGGGCCATGGATGACAAAAAAACAACTTTTTTTTTAAATTAAATTCCTATTTACAGAAAGTATCTTCTGGTGTAGAAATCTAAATCAGTATGAACTGCTTACCATTATAGGAGGTAGTCATGCACAATCAGACCTGTTTCTCAGCAGGAGATGAACATTCTGGTTTTGTTCACGGTTGGAAACTTGATAGCATATCCTATATGCGATACTTAATGCTTCTAAAGCATTAAGCTTTGTAGTACAGCTATTGGGTTAAGCATTCAGTGTCTACTCTTTCAAGTGAATACAAATTACGTGTCTGCTGTGTGACATAGAATTTCTACATTTTTCAGTAAAGCTGGAAAAAAAAACTTGCAGTTCTCCATAAATGTCATCCCTAAGGAAGTATAAGAAAATTTTGTATAAAGTCCTCAATAAACCTATGCTTGTCAGCACAATACTTTGAGCTGCTTTTCTTTCTTGTTTTTAAATGTTAGGAAGTAGACTTTTCTAATGAGCACCACTACTCAACACTGATTTGACCTGGAAACTTATTTACATGAAACGATGAGAATACTTATTCAGTGTTAAAAATACTTTGTATTTTATTACGTAAATGCTACTGAAAGATCAGTTCAGAGTTAAAAATGCATATGTGAGTATGACTTTGAGTCTGTGTCACAGAATTGAAAAGCTTTGCATGTAGCTCTAACTAGCAGGCAGTTTCAGTTTTAAGATGCTGTTTTCATTGATGGAGTTTGTTGAGGGAGTCTTATACCTGTTATCTGTCTCTTCTTCTCTCCCTTTCCATCTAG
Seq C2 exon
TATTGTTGTCCAGATCTGGTTAATGACTTTTTTCTGGGAGTGGTCCAAACGGAATGTTCTACTGCAATGAGCAAGACTACTGAATATGAGAAAGGAAAACTGATTATGTTAGTTAATGATTTCTATTATGGGAAACATGAAGGTGATACCCAACAGGTACAACAGGAGCAGAAGACTCATACAACGTTTAAGTGCTTCAGCTGTCTGAAAGTTCTTAAAAATAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014375:ENSGALT00000023225:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139121=zf-C2H2_6=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATTGCAAATTCTGACTTTTGT
R:
AGACAGCTGAAGCACTTAAACGT
Band lengths:
355-2020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]