MmuINT0178918 @ mm9
Intron Retention
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72160458-72167122:+
Coord C1 exon
chr9:72160458-72160567
Coord A exon
chr9:72160568-72166898
Coord C2 exon
chr9:72166899-72167122
Length
6331 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAT
5' ss Score
7.76
3' ss Seq
TTTTTTTCATTCTCTTTTAGTAT
3' ss Score
10.74
Exon sequences
Seq C1 exon
GTGCAAATTGTTCATCAAGTCAATCTAAAAATGGAACAACTTTTCCAAGAGCATGTCCCAAGTGTGATATTCACTTCAATCTTTTGGATCCTCTAAAAAATCACATGACG
Seq A exon
GTAAATCTTTTCCAAAATCTAATTTTGAAAGCTTGAAAATCCTTAAAAATAGTAATGACTGATATATAGTAAATAAGTAAGTTAGGAATGAAATCTTCTCATACTAGGTATATCCATAGACCTTAGGTAAAAATTTATATTCAAAATCACTCTACGTAAAATTCCTTAGTTCATATATTTACAATATATGTTTATTGTATTCTGATTTTAAACACAATAATATTGATTAAATCATATTCCTATTTGTAAAACGTTTTACTGTGATTTCAATCTTTTTATAACTTAAAATTCTATAGCTTATATATGCAAATATGTATTCCACATTAGATAATGAAAATAAATCATACATATTGTCAGTATTCAGACATTAACTTCAAATGTTCATGCTTTTCATGTAAAATAATTGTTTTGATAAATCCAGAATAGTTTGCATAAGCATACATTTGTGTAAAGTTTTTATTGAGGTAGGAAGCTTTTTGATTTAGATTTGAAGAAAATTTCAAAGTATGTGTGAAGTATGAAGTTTAGGTAACACTTTTCTTCAAATATTAGCTTTTATTGTGCTTTCCTGTGCCTTTATAGAAATGTTCTGTAATCTCCTTGTTCCTACTACCAATGACAGGAAGGAGGCAGGGGAGATAAAAACAGCACTGCGTATAGAGTACAAAAGGATTAAGAAGCAATGAGGTAGTACAGGAAGAGTCCTTGCTGTTTCAGAAACTTACAATTTTTAATTCATCATTTTTAAAAACAAATAAAAGCAGAATGAGCCGGGCGTGGTGGCGCACGCCTTTGATCCCAGCATTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAGCAGAACGAACTGACTGGCAGTTGATGGAGAAAGGTAGACATTCTTTTCAGTGATATAGTTACTGGTCAAGTTGCCCATACTCCTGTAAATAACCCTTCACTCGTAAAAGTAATCCTAGTCAAACTTATTGAAAAAAAAATGGAGAAAGACAGCTGAAGACAGGAGGAAGACTTCCTGGGAGCAGGGAAGTAGGAACAGGGACAAGAAGGGGTAATGAGGGTTGAGTATGATCAAAATATATCATCTATGGGGGTGAAGATGGCATCGGGAAACCCATTCTTATGAAGAGCTATAGACAAATAAGATAGAAAAATAACTTAAAAATTATAAACACATCTTTATTCAGAATTGCGTTTGATTTATAGTACTTCCAGCTCCCACAGTGTAGCATTAAGGACTGAACTCTGTGCTTTGATCATACAGGAAAATTATCTTGTCCAACTGATTTCACCTTCTTTGTAATGTTTGATAAGACTTATGACACTATTTGTTTGATATTAGAGACAGAGAGAAAAAAAGAAGTACATTAGTTATTCTTACTCATCTTTTTGACTAAGTAATAAAATCATGTGACTCAAGCCTACACAGGGACGCAACTGAGGAGGCTGGCCCGACTCATACCTGTCTAGTTTATAAGGTGGCTCTCAAAAAGAATAACTTCATATTAGTTTGCTTTATATACTCTAGGTTTGTTTTATTGTTGTTGTGTGTATGTGCGTGTATGTGTGTGTGCGTTTACAGATAAATGTGAATGTTCTTATTTTCCCTCTATTTCAAGTACAAATTGTATCATACTGTGTTATCTTCTTGGCCTAATTAACTATCTTTTCCTGTGATAAAAACATTATAACCAAAGAGGTGTAGAAAGAAAAGAAATGTTTTATGTCAGCTTACAGTCAGTCCATCATGAAGTAAAATCAGTGCAGGAACTCAAGGGAGGAACCTGGAGGCAGGAACTAAAGCAGAGACCATGAAAAGAAATGCTGCTTCCTGGTTTGCCTCCCATGGCTTGCTCAGCTGGCTTTTTAAAAAACATTAACCAAAACATTTCTGTATTTGAAGAAATTGGAGACCTCCATCCTAAAAGGTTTTTACAAATATTTAAAAAGCATTATTTATGATTACTTTTATTGGAAATTATAAAGGTTATCATGTAACATTCAAATATTAGAATACTATAGCATTTCATAAAAGCAACATAATTCATATTTTATGAATGTATATATTTTGTTCTCCTATATATTCCTTGTTTCATAGTGGATATATACATCATCAAATCTAGGAAGGGTAAGTTCAAAGTCTTGGGGCAATTTTTCAGTCACAGAAAGGCAAATACTACATGATCTAAAAAAACATCTCAGAAGGTGAAGTAGTTTACTTGAGGCTAAGGAGGTTAAGGAAGATGTGGAGAGGTTAACAGTTAGTACTGAATTATAGATAGGAGGTAGGTTCCTTATATTCTATAGGAGCACAACACTATAGGATGAATATAATCAAAAGAACACATTGTATATCAAAAAAAGGAAAGGCTTTTTGAATGTACTAATAAAGGATAAAACTTAAGATAATGGATATAATAATTACTGATTTTTGATCATTACCCAATGTAAACATGAGTCACATCATGTTAAACTTCATTTTTATGAAAATGCAAATTCTCAGCTCCACTCCCCCAAAAGATTTAGGAGCCTGAGAGATAGTTAAGTGGCTAAAGCACTTGATTTCTCTTTCAGAAGACCTGGATCTTGTTCCTGCCACTTACATGGCTGCTCATAGCTGTGTGTAACTCCAGTTCCAGGGGTAGCCTTACACTCTAATCTGGCCTCCAGGGAACTACTACACACATGTGCACATACATAAATATAGGCAACACACACACATGAAATAAAAATACATTTTTAATAAGAATTTAAATTACAGGAACTTAAACTAGATTGATAAGAATGAAGTATAGACGGTGTCTGATAACTTGTCAGACAGACTACAGACCACAATACTGAAATATTCACTAGGTACAAATGGCTATCTCATAAAATTAAGACTGAAGTGAAGGATTACAGAACAGACCTTAGAGCCAAAATGGTTATATGTCCCAACAAAGTTTTTCAGTTGATTTTGAGTCCTATGTAGTTGTGCCCTGTGTAGCTTATTATCTTTATATAAAACCTAATTCAGGGGGCTGGTGAGATGACTCAGCGGTTAAGAGCACTGACTGCTCTTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTATAATGAGATCTGACGCCCTCTTCTGGGGTGTCTGAAGCCAACTACAGTGTACTTACATATAATAAATAAACAAGTTTGTTTAAAACCTAATTCTAAACTTAGTCCTTGTTTCTCAAGTTGTACTTTTTGCATTTTGAATGTTTCAGGATATTTTGACTTTCCTCAAAAGCAATTCCTTACTCTGTTTACTGTACTTGGTTTTTATTGACCATTTGTTCTTTATCTGTTTTTATTAAGGATCTAAATCTAAAATATTATTGAAGAGGTATTATGAACAAGAATTTTGTGCTACTTTTAAAACTCTGATCCTGTCTTTTTTGTGTATGAAAGAAAATAAAACAGTAATTAGTTGCTCATTTGTTATGTATATAATTTATGAGCATCTTTGTGAAACCATTATCTTTTATAAATAGTAAAGTAGAAATTTACACCTTACTCTTCCATGGGTCATTTTATAGCTTCAGAAAAGAATCACATACCAAGAATCACATGGAGTGGCTTCTCCTGAAAGCCAGATCTAACATTTAGGGTATACCATCAATAGTGACCATTATTAATTGGAAGACTGAATTAAAGAATTTTTAAATTCTAATTTTCCTGAGACTTTTGTCATTCCCCCCACCCCCTTAGGAGGGTTTTAAATAAGGTTAGTACTTTGTTAATATAATAACCATTATTATACATACTTCATACATATACTTTAAGTAATTTCTTTCTTCTGGTCTCCCTCTTAACACTTTAATCCAGGGCCATTTGCTTGCTGGGCCAGTGCTCTACCACTGAATTGCAGCCACAGCTCCTGAGTGATTTTCCATAGTGTAGTATAGTAGCTTATTCCACACAATGCCTCATTTCCTTAAAATTAAAAGTAGCATTATTTCTATTAGTCTTATAAAAAGTCTTTAGAAATAGCTTGATTTTTTTTTTTTTTAATTTTGAATTCATAGATGTTACATGTACCTCATGAAAAATCCAGAAATAAGGCTGGGCCTTTTATCCAAAGACTCAGGCAAAAGTCTGAGTTCAAGGGCAGATTTAGCAAATCAGCTCTGTCTCTAAGAAAGAAAATACAGAAACATAAGTAACAAAGCCTTTTCTTACCTCTCTTTTATTTAATTTATTTATTTATTTATTTATTTATTTATTATTTTTATTTTGGTTGTGGTTCTATTCTACCCAAGGGGAAAAGATCATCTTATTAGGATACTAATATACTTACTTTTTTTTCTCTTTTCTTTCCTTCAAGACAAGACTTCACTATGTAGCCATGGCTGACCTGGAACTTACTGTGTAGACCAGGCTGGCCTTAAACTCATAGGGATCCAAGTGGCTCTGCTCTCTGCCTCTCTGCCTCTCCGTGCTGAGATTAAAGATGTGAGCCACTATTCTCAGCAAATACACTTATTGGTGCAACCTCAACTTGTAAATATAAGTTAGTTCCTCTCTTGTGAATCAGTTTTATTCAGTATTTTTCCTACTTCATAGATATATTTTAAATGTGGTTTTGTTTTGTTGTTGTTGTTGTTGTTGTTTGGTTGGCTGGTTGGTTGTTTTTGTTTTTGCATTTGTGGATTTAGAAATTGAAAAGATAATTCTGGCGATCAGTTCCTTTCAAAAGTATTTGAATCTCTAGAACCCATATTTTAAAAGGTCCATGTGGTGGTTCATGCCTGTTGATCCAAGCTAGCTGGATGGTTCTTGAGGAATGACACTAAGGTTCATTCTCTTCTAATGTTGTTGTCCAGACATGGTAAATAACTTTTTTGGGATTGACTAAAGCATGTCATCTGGCCTCCATATATGTATACATGTGCATGTACATGTGCTCATACCCATATGTACACACCTGCATTTACATAAATGTGCATATGCATATGTACAAGCACATACACAGTAACACACACAATGTAAAGATAAAACTGACAGTGAAATGAAGTAGCTGTACTATTATAACCTTGCAGAAGATGTTGTAGATCACAGGCTGAGCTCCTCACATTATACTGAGTGTTTCATGAATGATAATGATCCAAAGAGTCACATGTGGCAGAAGAGGAAGTGGATGTTATAATCATAGCATGGAATAATTGTGTTCCATTACAAATCCTGATTTAGCACACTAAAGCGCTTATGTTATGAAAGAATTTCCTGTGTTTCTTGTTTTAAGCCTTCACTTGTAAAAATTGCAGTTTAGGTGGTCTGAAGCAGTGCTAGGAATTACCATTTAATGAATTATTACAGATTTTCTAATACAGGTTTTTTTTTTAGGTTTGCCCTCAAAGAAAAACTCATTTAAAAAATTCTACAACTAAACATTATGTATAATAAATAAAATTAGCTATATCTTGATTTTAGAAAGCTCGTATGGAAAGTTTCATATCGCAATCAGCTTTTGTGACTTTACTTTTATTACTGAGAAGTAATTGTCTTCTTCAAATATTTTTAGCATTCAGGATTCCACGATATACTAGCTGCATTTGTCTCCATGTCCCAATAATTTTTTAGTTCTATGAATCTAGAGCATGGCAGTTTTAGCTGTGTAAAAATCTAGTTTTAACCAACTTAGGAAGTTTTCATTTACCTGATACATCAAAGGATGTAACATTCACCTGCTGTACTGTTGACATGGTAATGAAATGAATGATTTTTGGTTACGATACAAATGACTATTAAACATGTATCTAAGCAGGTAAATTGCATGGGAAAAGTTTAAATAGTCAAATCCTAGTCTTAAGGCTTTTTTCATCTCTTTTTAAATTTTTGTTTTGTTAAGATAATGTTTATGGGCTGGCGAGATGGCTCAGCTGTTAAAGGTGCTTGCCGCCAAACCTGACGACTTGAGTTCAATCCCTGGAACCCACGTGGTGGAAGGAAAGAGCCGACGTCCGCAGGTTGTCCTCTGACCTCCACAAGTGCACTATGGCATTCACACCCATACAGAACACATACACTAAACAGATAAATAGTCTACTTTTAAAAAGTCTACTTTTCTAAACTTGTTAGAATATCCACCATAGGCTTTCACTATTCTTCCAGATATCTTATCAAGCATAGTTATACATGGTTTGGCCGTAGTTGAAAACATAATTGTTTTTGCTGTTATTTTGTAATAAATAAGCCATTTTTTTCATTCTCTTTTAG
Seq C2 exon
TATTGTTGTCCAGACATGATAAATAACTTTTTGGGATTGACTAAAGCAGACAATTTAAATTCAGCAAATGAAGCTAAGACTCTTGAATCAGAGAAAGGAAAATTGATAATGTTAGTTAATGACTTTTATTACGGAAAACATGAAGGAGACGTCCTGGAAGAACAGAAGACTCATACAACCTTTAAGTGCTTCAGTTGCTTAAAAGTTCTCAAAAATAATATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535-Zfp280d:NM_146224:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PD(5.6=16.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: