GgaINT0033897 @ galGal4
Intron Retention
Gene
ENSGALG00000005206 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr9:7578509-7578941:+
Coord C1 exon
chr9:7578509-7578632
Coord A exon
chr9:7578633-7578869
Coord C2 exon
chr9:7578870-7578941
Length
237 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
GAACTTGTTCTTTATTTTAGTCC
3' ss Score
7.8
Exon sequences
Seq C1 exon
GGAAAAAGACATTTATATTGGCTATTTGCCTCTTGCCCACGTTCTGGAGCTGAGTGCTGAACTTGTGTGCCTGTCTCATGGATGCCGCATTGGTTACTCTTCGCCTCAGACATTAGCTGACCAG
Seq A exon
GTACGTTGTTGATGTAAGCCCATATGGAGAGAAAAAATAAATAAAAAATTACTCGTGTCAGTTCTTGGTTATAGATCCCAAGAGACAGGATATTGGCAGTTATGACTGGTATGCTGAGGTAGTTTAATTGTTGACAAGAAAATTAAAACGATCATTTGGAAGATGTGCTATGTCATTTTGTTTCTTAAGTTAAAAGTCTTGAAATGTGTCTGCTAATGAACTTGTTCTTTATTTTAG
Seq C2 exon
TCCTCTAAAATCAAGAAAGGAAGCAAAGGTGATGTTACTACACTTAAACCAACCCTAATGGCAGCTGTCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005206:ENSGALT00000008360:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTTGCCTCTTGCCCACGT
R:
GACAGCTGCCATTAGGGTTGG
Band lengths:
172-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]