MmuINT0010169 @ mm10
Intron Retention
Gene
ENSMUSG00000032883 | Acsl3
Description
acyl-CoA synthetase long-chain family member 3 [Source:MGI Symbol;Acc:MGI:1921455]
Coordinates
chr1:78696081-78696500:+
Coord C1 exon
chr1:78696081-78696204
Coord A exon
chr1:78696205-78696428
Coord C2 exon
chr1:78696429-78696500
Length
224 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ATTTTTTTCCTGTTCTTTAGTCT
3' ss Score
7.94
Exon sequences
Seq C1 exon
AGAGGAAGATGTGTATATTGGCTACTTGCCCCTGGCACATGTTCTAGAATTAAGTGCTGAGCTTGTGTGTCTTTCTCATGGATGCCGAATCGGCTACTCTTCACCACAGACATTAGCAGATCAG
Seq A exon
GTAAATCACATATCTGCAACTCGAAATACTAAATGTATTTTTAACATGTTTTCTCTATCAGTTTACATTGTATCTTCAATTATCTTAATATAAACATTTGCCTTGTATGTCTAGAATATAAGTATACTGAAAGGGTAAATATATCATATGCCTTTGAGCTAAGAATGCCATTAGGATTTTAAGTTAAAGATCTTTATGTAGATTATTTTTTTCCTGTTCTTTAG
Seq C2 exon
TCTTCAAAAATAAAAAAAGGAAGCAAAGGAGACACATCCGTGCTGAAGCCAACACTGATGGCAGCTGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032883:ENSMUST00000035779:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.177
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(8.6=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAGATGTGTATATTGGCTACT
R:
CGGAACAGCTGCCATCAGTG
Band lengths:
196-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types