HsaINT0002905 @ hg38
Intron Retention
Gene
ENSG00000123983 | ACSL3
Description
acyl-CoA synthetase long-chain family member 3 [Source:HGNC Symbol;Acc:HGNC:3570]
Coordinates
chr2:222922708-222923149:+
Coord C1 exon
chr2:222922708-222922831
Coord A exon
chr2:222922832-222923077
Coord C2 exon
chr2:222923078-222923149
Length
246 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CACTTTTTCTTATTTTGTAGTCT
3' ss Score
8.35
Exon sequences
Seq C1 exon
AGAGGAAGATGTCTACATTGGATATTTGCCTCTGGCCCATGTTCTAGAATTAAGTGCTGAGCTTGTCTGTCTTTCTCACGGATGCCGCATTGGTTACTCTTCACCACAGACTTTAGCAGATCAG
Seq A exon
GTAAGTTCAGTGTCTGTGACTTGAAATACTAAAAAATCATAGTGAATTGTAATGCATTTTTTTCAGTCAGTATGACAGTATATTGCGAGAGCGATGGTTCATTTTAAAATGAGCTTTAGCCTTTTAAGTGCTTCTTAGACTGTAAGTACATTAAAATAATTTATAATAGGCTTTTTGATCTAAGAATACCATTGAATTTTAAAAATAAGGATCACTTTATATGGATCACTTTTTCTTATTTTGTAG
Seq C2 exon
TCTTCAAAAATTAAAAAAGGAAGCAAAGGGGATACATCCATGTTGAAACCAACACTGATGGCAGCAGTTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123983:ENST00000357430:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(13.2=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAAGATGTCTACATTGGATATT
R:
CGGAACTGCTGCCATCAGTG
Band lengths:
196-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development