GgaINT0034797 @ galGal3
Intron Retention
Gene
ENSGALG00000001896 | NTNG1
Description
NA
Coordinates
chr8:908295-918272:+
Coord C1 exon
chr8:908295-908473
Coord A exon
chr8:908474-918245
Coord C2 exon
chr8:918246-918272
Length
9772 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
ATTGTTTTCTTTCTCTACAGGTA
3' ss Score
12.67
Exon sequences
Seq C1 exon
AAATAGGTGTAAGTGCAACCTTCACGCTACTGGCTGTAAAGAAGAAAACAAAAGACTACTTTGCGAATGTGAGCATAACACAACTGGCCCAGACTGTGGAAAATGCAAGAAGAATTACCAGGGCCGACCATGGAGCCCTGGTTCTTATCTGCCTATACCTAAGGGCACTGCTAATATCT
Seq A exon
GTAAGTAATTCTGTAAAATAAAAGATATTTCATTCTAAAAATTCTGCCAGTATTGCAACTATGAAGAAAGATTAATACTGGGAAAATTTTGTCTTTTTTTATGACTCAATGCACATAATTTAACATGGCTAAAAGCACATGAATTGCAAGGATGCATTATCTCATTGTCTCTGATTCTACATGCTTGTAAATATTTTGCATGAGAACTGCATAGAATCACAGAATGGCCTGGGCTGAAAAGGACCTAAAAGATTGTTCAGTTTCAACCCCCGTGCCACGGGCAGAGTTGCCAACCACTAGACCAGGCTGCTCAGAGCCACATCCAGACTGGCCTTGAATGCATCCAGGGGTGGGGGTTCACAACCTCCTTCGACAAACTGTTCCAGTGCATCATCACTCTCTGAGTGAAACATTTCCTCCTAATATCCAACCTAAACCGCTCCTGTCTTAGTTTAAAACCATTCCCCTTTATCCTATCACTGTCAACCCATGTAAACAGTCGTTATGCTTGTATCCATGGACATACTTTTTGATACTGCACAGAAAGGGCTAAGGAACCAAAATATCGTTGCACCCTTAACATGAAAAAGCACATGTATGGGAGGGAAACCAGTAGGAATGTCTGCAGCAGTGCTCCAGCTGTGGCTCCCTCAGCTCTCCACTCATACATTCTTATTGCCTCTGGACTCAAAACAACCGCAACACAATTAGTCAGATAAGAGCATTACTGATTTTGCATCCATTTAAGAAAATTTTTAAAAGTCTTTCTATTAATAATTATACCTAAAGGCTGATAAAGGAATTTTGTACCTGATATTGACCTGTAATCCAGATTCACACTCAATCTTTCTGATCTCTAAGAGGGAAAGTGAGAGCAAAAACTGCATTTTTATCTCTGCCCGTTTCAAACTAATACACGTTCAACAACTTGCATACTCACTATCTCATACGTACCATTCCAAAATGCTTGAATATCATCCGAAGGAAGTTACTTGCAGCTACATTTCCTGGTCCTGGACAGGATTAGGTCAAACAGAACATGGTGCTGAAAGAGAGGTTGCAAAGCATCAGTTCTTTTTTTCATGCATGTGTGAAATACACAATGATTCAAATTCCTCCTGAGTAACAGACTTACATTCCTTTGAAGAAAGGATTAAAGAAGATGAGAATAAATCACCAAACCTTTTGACAGAACTTACTACTTTCCTTGAAGAAAAAAGTCTGGAATTTTACTCTGATTAAAAGCAAAACATTTATTTCTAGAATATTAGAATATAACAATTTACTGAAAAGTTATGTAAGAGAAACAAAGCTATGTAATGCATTGAATGGAAGTTTAAAATCAGGAGAAATGTGCAGTGCTCAGAATGTTATCTAAGACTTCAAAGCAGCAGCTGTGAGGAATCAAGACTCAGAAATGAGTATCACAGGAAGAAGGACCTTATCAAGTTAAATGTGAGAGTAATAGTCCGAGTAACAAACCGTGAAGTGTGGGGCTATGAAATTATGATAAAATTCCTACTGAGCAGAAAAAAAGGAACCTTCAAAAAGCAAGCAAAGAACATTCACTAAGAGAATTCACTTTTTCCAAGTTATAAAAAGGGAGCATTGCTCTCAGAATTAGTACTTTAAAGTTTTGTTTGAAGAAAAATGGTGAGATTTACTAGCTTGATTTTATTTATATATGTATTTGTATACAAACACATGTATAAGCATGTATTCATAGCATATATATAAAAACATACATATACACACACACACACACACTCACATATCATGCAGTTGCTACCCCAGTAATCATCTGATCTGGAGAAAAAATACATCTGAAAGTAAAAATGGGGATATCATTCTACATACAGTTTGTTATGTCAGTGACATCATTTTAAATGAGTTGAGCACGTACCAAAACAGTGGAACTAGCACACAGTGAAAGGTTGCTGATGCTTGATGAGACAACTTTAAACTCTGAGTTCCATCAGATATACTACTCCACCAAAATCAAAAAGTGTTGCAAAGAAAAGGAAAAATTTTCTATTTAATAATACTATCATTATTATTATTATTACTACTAAAGCACTGTGAAAATGTAACCTTATTTGAGCTGACCAGTGTTTCATCAAACCTCAAACCCTGACTTCAGCAGTGTTTACCTGAAGCAGTTAATAGAAAGCTGGAAGTAGTAGGTGAATGTAGAAAGATTTTGTGTTGGCCTTTCCAGTCCCAAGCAGTAAAGAGGCTTTCTGCGCTGGAGCCTCCTACAGTGGTTCTACATGCAGAGGAGAAAGAGACAGCTGTCATAAATTCTATCTCAGTGGCTTCTTACAGCAACACACTTTACATTTTAAAGACACAATGAGTGAAAATTATTCACATTTGTTTGCTTTTTGTGTTTTTATTTGTTTAAGCCTTTGTCCCCTCAGGAAGAAATGGAATAATGTAACCATATTTATTTGTTATTCTATTTATTATTTTATAGACTTGGCATGTCCACTTCTTCAGTCTGTTTCCCAAATAAAGAATCCTAACCTATTTAAACTTGTCATATATAAAAGAGATGCCACATCCACTTACCTGTGCCATTTCTGCTCTCTTCTGGCTCTGTGGTAACTTTCTTTTGGATCGGTGAGGCTAAAACTACACATCATATTCTAGACATGAGCATAACATGGATCATTTACAGTGGCATAAAAAAGTGTCTGCTTTGTATTTTGTTATTACATGGATCAGCCCTTAAGTCCTTTTTAAGAAGAACTGGTGTCACACTGACAACATTTCTTCTGGCATCAAGGCTGACATAAGTGACAGGTTATATGTTACAGTTATTCGTTCAGTAATGTCATATTTGAGTTCCTTTAAAACACTTTTCCAGTGAATACAACCATATGGCAATTCTTATTGCTTGGTATTACTTTTATCTTCTAAAACAACTTCTGGTGGTGGCAGACTTATAAATTCCTCAGTTTGTGAGAATCCCTCTAACCTTTGCTGTGAGCATCAATGCAAACAATTAATTTAGTATTTAGCATTGTCTATTTATCCAATCACCTCTCTGTGAAGCCTTATGCTTATGATGTGTTTATTTAAAGAAAAAAAAAAGAAAAAAAATATGTATTAAATTTAAGTCTGTAGCAAGATGATTCTCCAAATACTGTCATTTATATTTAGCTTGACAGATTTTTATGCTTTTTTTCCTATCTTCCTCTATTAACCTAACTTACACTTCTGAAGGGCATTTTTCTAAAGGCTTCTTTATTTTGCCATTTGGGTAGGTTTTGTTATGTTCTTAGTGAAGGTCATTTTTACAATTTACTTTCTTTTGTTTGGTTTTATGTAATTATTCTGAGTCTCTCATGGATTTTTACATGTCTCTCTGTTGTCTGCATTACATTTGCTTAGTTGTTCTTTTTGGTTTCCTTTTAACTAGCTTCCTCATTTTTATCTGCTCTCTCTGAAAGTTAAATATTTCTGCAGTGGATTTTTTTCTCCTTTTCCTCTCAACAAGTATGTTGGCCTTTATTCCAGAGCTGGTTCTCTGATAGCTGCTTCTTGAATCAGGTCCTATGCACTACTAAGAACTAAATAAGCTTCTCTCTTGTGGGTTGTCTAATTACTTGCTACAAGCAGCAATCATTCATGGTATGTAAAATCTTCATTTCAGTAAACGTAGTCCTAGCATCATACTCTCCTTAGTTAGCCATACATTCTGTGAAAGTTTTGGGGAACACATTAGTAGAATTAATTATCTGGCTTGGCTCTAAACCTTCCTTGCTATGGTACTTATATTCCCCAGAGATATAATGACTGGTCCTCCACTACAGCAGTGTCCTTTGATTCTTCTCCTCCTTCCAATTTTCAGAGTCTACCTTCTTCATCTAAGACAAAATATTTTTCATTTAGAATGGATTTGAAACATTTTTGTTTTGAATGAGCGCTTAAATAAGATACAGTTAAAATGTAATTGTATAAATGAAAATTTTGGTTTCCACAAAATAAAGATTTCTCCAGACATTCTCTGTTATTAGGGAATTCGCTTAGATTCAATAAGAAGCCTAAGACTGATTCAAAAACTTCCCAAACAAGTATTGACTTGGTTTCCACTGTCCTGATTCTGCCATTTTGGTAGCCAATGAAGCTTGCTCATAGCCATTCAAGCTACAGCTCTTGAAACACGAGAGCATTCTAGGCTATATTCCACTCATAATCTAAACCTTGATATAAAGCTGACATCTGTATCCTTCTCATTTTTATTGAATTTTTTTTAGGAGAATGCAAAGCATTTTTCCCTGCTTTGTTAAAGACATCAAATTCTTTGCTGTATACTGGTACTACTGCATAACATTTATTTTATATTTTCACTCTATCTTATTGACTATTTTGTGATTATATTTATTCCCTTGTGCTGCCACATTCTACAAATAGTTTGTTCTGCAATATGTTTCGACACTCAGAGTGAACTTATTGAATTTCTCAGTACTTGGTATTACAAGATAGCTTTTCTCTCAGCAGTCATACGTGTCTGACAGCACCAGCCCTTTTCTTCCTTCTGTTGTTTAGATCATCTCTGGCACTCATGTTCTTTGCTCCGTCAAACAGAGCTGTCCGAGACTGTGCTGGGCTCCCATCCATCAAAGCCTGCTTGCTTTTTTGTCAGTCCTCCACAGCCAATAACCTGTACCAGAAATGTTTGACACTCAAGCTAAAAAAAATGCCTCCCAGCTGCTACCTGACTTTGCTAATTCAAAGTTTGACATGAAACAAAGGATTGACCAGGACACAAGGAACACTGGTGGATTTTTCAGTCAGCAGTTAGGCAGATAGTCTCAATCAGTTAGCAGAATTTCTCCTGCAGCAGGTTCGCCTCTGACAGAACAGCCTCTGTCTCAGCAGCACAGTCCTATTCCTCCCTGAACAGGAAAAGACTTATGAGGCATCACCGCAGCACAGCTGCCACAGAAACAGTTCTGGCAAAAAGTAATGGTACTTAAAGTATTGCACTGATTACCCTCATCTGTGTTCGTATTTTTCTCCATTAATATTTGATGACACAAAGCCATCTTGAAGGACCAGCACAAACAAAATTGGCAAGGAGGTTGTATGATGACAGGCTTGTTATTGAGGGATCTATGTAGCAGAAACCCCTATGCCTGAAAAGACCATGCAGTCAATTGTCTTTTCAAGGCAGACTCACATCGTAGATACAGCCTCATTTCATAAGGGTCCCATTCTCTGAAGCAACAGACAGCAGCTTTCCAGTGCCTACTTTCATGAATTAAGTAGAGGATGTTGTCCTACATGATTCTCAGTGCAGAGGAATGGGGCACGCTTAAGAACAGAACGTTGCTTCTTGACAATTCTGATAATCTTTTCAATCTTTACAGAGTGAACAACTGCAAAATTAACGGTAGCAGGAAGGAAATCTCTTTTGTCAGAAAAGCTTTCTGACAACTTTCATCAGCAATTCGACTTCAAAATTGCATTGCGTTATCTATTCTTGTATCTTCTCACACCTTCATAACAGGCAGTCTAAATTCTCAGTCTCCAGGCTGCATTCACCTCACCTGGATAATTGTGGATGACACTTGCTCCCTGAATATGTGAGCTGCAAACCAGGTATAGTGCTCTGATAGCAGTAGGAGCCCGTCCCTGACTCCTCATCATATGGCAGGTACACATCCAGCATGATGAAGGCAAAGGCAGAGAAGCTCATGAGAAAAGCAGAAGCCAAGATTGAGTTGCCAGAAAAATTCCTCCATCCCAAATGCTCTCTGAGCCCAGGAGGACACGCAGCTTGACTACATTACCTGTTCTGATGGCAGGAAGCATGCAAACACAATGACGATCACTGGCGATAAGAGGGGCTGCAGCATATGGCCTGCTCTGAGACTGCAAGTTGCAGCCTGGCCCTTCTCACTGAAAGCTTGATACTATTCCTTGGTGTTATGCATTCCATACTGACACAATCTGTACAAGAAATCTAAAACCTGCTTCCTTCACAAGTATCCAATTTGTGGAGTTTTTTTTTCCTCCATTCACAATAGTCAGCTACACAATATCTAGTCACTAAAACAACCCATTTCCTGATAATGGGAAACAAGAAGATTATAAGGCAGATGCAGAAGACCATATGCAAGGAAAGCACTAGATTTTTTCTCTCATGTAACGTGTGCATATTTAGACGCACTTACAGTGAACATGCAGTATATGAAACCACCACCCTCAAGCCAAGTCAAAAATAGTAAATAGGATCAGAGACTTCTGCAGTGTTCACCATTTTGGAGGCAGGAGCTACCCTCGCTCTTTCCTCAGTTCAAGACCTCCCATTACAATGCATAACCATCCCAGTGATACCAAGTGGAAGAACTCAGACTGAACATTGCTTTGGTTTAACAACTCAATATTTGTAAATGCAGTCACTTGATTTTATTAATTTAGCAAAAGAGAGCTGTGCTTGGTTAATCTCTCTCCACAAGGCTGATGGGCACGCACCATGCCAGGGGACAGCATCCCGCCCAGATCCCAGCAGCTGCCTCCCCACCATGCCGCAGCCCCCGCATGGCCTGTACGTACACCTCAGGGCTGGTGCTGGGAGTACCTGCTGCACCTCATGCAGCTCTGCTGTTTCAGAGCTGGCCTCAATAAGCGAGTCCAGATCTTCGCAGAGCACCACTACTAAGAATATATTTCCCATCTTACGTGCACTTCAGTTTTTAAGGAGTGTTAATAGATCTTGTCTCACGGCCCTACGCAATCACCTCTTTTCTAGACAAACCCAGAAGTGCCATTCTCACTCTCTTTAGCAGAAAGGGCGTAAAGTAGAACGCTATCAAAAAGGTCATTGTACATAGGGTAACTGGTATTACAAACTTTAAAGAAATATAGAAACTATGGAAAGAGCAAAAGAGCTTTCAAACAGAACGAATCCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAAGAGCAAAAGAGCTTTTCAAACAGAACCCTGAGACAACCTTTGCCAAGTTTAATTCAGAGCCCTTCAGGCGAGCAGGTTTTTTATTCTCATTATTCTCTGCCCAGGAAGCATTTATCACTATGAATTTGTGAAATGGAATAAAAAGAGGAGATGAGACTTGCAGGAAAGCCTCTCCCTTTGCTACAATCTGTTAAGGATAGAAAGGAAGGGATATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGAGAGAAAAGAGGTTTGAGGTGGGGGAGTATACCAAAGGAAATACAAATAGAGTTTCACAGTGGAAGTGTGAGTGTGAGAACACAGGATCTGTACTTTATCTATTACTTTTGCAGTTTCCATCAGTATATAAAGGAAAATGAATTCTGCTAATTTAAAATATCTATAATGACTTGCAAGAAAAGGAAACAAACTTATTTTGAAACTTTGGGGAAGTATGTTGGAAAATTGATTGCCTTTTTGACTCTTAAGGCAAGGGGATGGAAGTTCTCGCACATCAACCTATTCTAATTTTGAAGTACATAGTGAACTGAGTTCTATTTATAACTTTTAGAACAAAAAATGTTCTATTATTATCATATTCTTATTTAGCTTTTAATACTTAACTGTGTGATTTCACGTGCTAATCTCAGCAAAAATAAAATTTGTAAATTATGCCTGAATGAGAGTTTCTTTCAGCAGGGGCTCCTTGAGTGCAGGGCCTGGCCCTCTGCAGGTCCCAGTTCCCACATACAATGTGAAAGTAGGGCAGCCTTTCTGGCACGTACCCCACCATTTCCATAGCTGTTTAAGGTCATCATTCTGTACACCTAATTACTTCAGCTTTCTCCTTGCCAAGCCAGAATGTAGTAATGATCCCAAATTGACTCTACCACCATACCTACATTGAATGTCATTTATCACGAAAACATTCCTTCACTCCAGTTTGCTATGTTGGAGAATAGTCCACACGATCTCTGAGTAAGAGAGAACTTCAAGATGGATTTTGAAAGTAATATAGCAGATGTTTAATGGAGAAAAAGATTTCTGCAGTGAAGCACATGCTATTAAAGCCAGTAAAACTTACAGAAAGAAAACTGTATCTAACTGAGAGGATGCAAATATTCAGAATTTAATTACTGATCTGCAGTTTAACGCTGGAAACTAGCAATATACTATACACAATAAATTATAATCAATACCATTTAATGTAAAGAAAATGGCATCTCAGAAAAGATTCTGTGTCCATAGTTTTGGACATGAAAAAGAGCACCATTCATGGCAGACATGGCCAGAAGTCAGAACTGCACCTGCTACATGTCAGAACTGCATCAGGCAACTGGAGATCCCACGTTGCTAGCAGAAGAGCTTTACTCCTCAGCAGCCCCACCTCACCTCTTCTGGTAAATCTCACCTGCCTCTTGAATGGTTTCCCTGCATTAGTTCAGCTCAGAAACTGAAATGAAAGCAGGAAAAGGAATCAATGAGAGGCTTAGTCAATATGGCAAGCCTAATGCATTAGATTGTTTTGCTCAATTATTTTTCTTCTCCTTAATTTAGGTAACCATCAGGTAAAGAATGAAAAAGATAGCTATGTACAGTTAAAGCAACAGAAGCTATCAAGTGATTTAAACAGCTGGCCAAAGCAGTTAGCAATGCATCTATCCTTCTGGTTCATTTTTTTTCCCCTAGATCTACATAATACATGCATGAGTTATACTTTTATATAGAGCATTAAACCTAATGGCTGGTTAGTTCAAATACAAAACTGTTCTGAACAAATTCGTGAAGTTCAGAGATCTGGTATGGGTCCCAGAAATACCCATCTGTCAATACATTTTAGTGGTCCCCACAGTCTCATACTGAAAAATCTAAAGACTCTGCATTTAGAAAGGGCTGGATAAATGCTGGCAATTGCTTGGAACTATTTATTGATACAATATTCTGAAAATGAGGAGATATTTTTTGTTCAGAATCTTAGATGTAGTAGTGCTGCCAACTACAGTAAACAGCTAACAATATCTTTTTATTGTTTTCTTTCTCTACAG
Seq C2 exon
GTATACCCAGTATTTCCAGTATTGGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001896:ENSGALT00000002932:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=77.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]