GgaINT0034974 @ galGal3
Intron Retention
Gene
ENSGALG00000005752 | F1N8D7_CHICK
Description
NA
Coordinates
chr8:14401370-14402368:+
Coord C1 exon
chr8:14401370-14401557
Coord A exon
chr8:14401558-14402277
Coord C2 exon
chr8:14402278-14402368
Length
720 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
CTGTTGCTTGTTTGTGCTAGTCA
3' ss Score
6.12
Exon sequences
Seq C1 exon
GCAGAACCATCATCCTCTCAACCCATCACATGGATGAGGCAGACATTCTTGGAGACAGGATAGCCATCATATCCCAGGGGAAACTCTTCTGCTCAGGCTCTCCTGTATTCCTCAAGAACTGCTTTGGATCTGGCTTCTACCTCACCCTTGTTCGCAAGGTGAAGAACACCAGAACTGGAAGGAGCGTA
Seq A exon
GTAAGTATATGCACTTTCCTCCTTGTGTGTGTAATCTGAAAAGTTCATGTTTGTGCACTGCACCAAGGTAGAAAGCAATCAAGTGCTGCTTGAGACTGTAAAACTAACTTCAAAATAAAGAAAGCAATGACAAAGTTTGGTAACACCTCATGAAGTTATATGGCTGCATGAGAATATCTGCAATAATATTATCTGATTTTATACATATACATTCAGCAAGGCCAGCTAAGTGGACATGAAGCCTTCAGTGGTCTATAGTTCACTTTCTTCAGCTATGCATGTTAAAGCATTTACCTGTCAAGTGGTCTTTCTGCCTGAAGTACACTGACTGTAAACATGGTGTTCTGTTGGAACTAGCTCAAATAGCAGGCAAGTAGAACTTTAATTCACAGTAAATGAGCTTTCTACAGCTTGAGAAGTATGGATCTGGATTGTTTCTGCTGTTGGTAGCACTTTCAGTCTTAATACCAACATGATCTATATACTTATGGCCACTGTTCTTTGCATTTCCTCAGGCATTTGCATGTAATTTAGAACTGACAGACACAACTTTTACAGGAGGATTTATGTTGTCTGTATTGCTTAATCCAGTGCTCAAATTACTTTCAGTGAGATCTGTTCCAGATGACATACTTTTCACTGACTCAAACTGGTCAACTGTTACATCTTATTTGCATGGATCTGAAGAATTTTCATCCTTCTGTTGCTTGTTTGTGCTAG
Seq C2 exon
TCACTTTGTAGCTGTGGATCTCAGTGCTCCTGCTCCTGTTCCAGCTGTGCACTCATGGACAAAGAAGGAACTCAAGAGCAGGAACTAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752:ENSGALT00000009238:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAACCATCATCCTCTCAACC
R:
CACCTAGTTCCTGCTCTTGAGT
Band lengths:
279-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]