GgaINT0035992 @ galGal3
Intron Retention
Gene
ENSGALG00000001938 | E1BW83_CHICK
Description
NA
Coordinates
chr8:1201641-1212019:-
Coord C1 exon
chr8:1211837-1212019
Coord A exon
chr8:1201768-1211836
Coord C2 exon
chr8:1201641-1201767
Length
10069 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GTTACATTTTCTCCCAACAGAAA
3' ss Score
9.8
Exon sequences
Seq C1 exon
ATGCTGCCGCTCCTGCTTCGCCTCGCGCTGCCCGCCGCCTGCGACGGGAGCCGGGATGGCGACTCGCGGTACGCCAACCTCTTCAAGAAGCTGGACCTCAACGAGGATGGGAGGGTGGATATCGCCGAGCTCCAGACGGGCCTCCAGGCCATGGGCATCCCGCTAGGCAAGGAGGCGGAGGAG
Seq A exon
GTAGGAGCGCGGCCCGATCTTTCTCCAGGCGGACCCTCCCTCGGCCGGGCCCGCGCCCCGCCGCCCCCCGGTAGGTGAGAGGCGGCCCACCCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCGGGGGCTGTGCGGTTATCTACGAGGTAACTCGAGCGCGAACGCTATTTGATGCGTGGCAGCTGGTCATTCTGTTGCCAGATGGGCTTGGCCTGGCTTAGTCATCGCGCATCACCTCTGCACTTCCTTGGCCCGTACTGCGTGGGGTGCGATGGCGCTTCTGCCCCAGTGTGAGGGAGGATGTGTGTCTGTTGCTGTCTGCACGACCTGGGTTAGAGCAGTGTGTGGGGCAGTGGGTCGGTAAGCTGCCGTTTCAGTCATACGGCAGCTGGCTGTGGTGTCGAAGCAAGCGGGTGAGCCCAGCTTTGCGTCAGCATGTGGTGGCAGCTGGAGCCACAGCTCCTGTGTGTGACAGCACCTGGGTATGGCTGTGCTCTGACTGCAACAGTCACTGCTCTTGCTTTGAGCTGCAGGTTCTACAGGGATTGTGATGGGACGAGGGGGAATGGCTTAAAACTGGAAGAGAGGAGTTCCAGGTAAGTTGTTAGAAAACAGATTTCTACTCTGAGGCGGTGAGGTGCAGGCATAGGCTGCCTGGAGGAGCTGTGGATGCCCAATTCTTGGAGGCCTTCATGCCTGGCTTGGGTGGAGCCCTGGTCATCTGGAGCTGTTGGGTGGCAGCTGGCCCTTGGCAGGGTGTTGGAGCTCAGTTATCTTTTAGGTCCCTTCCAAACCAAGCTGCTCTATCGTTCTATGACTATGACTTTATTCCATTCCCTTTTCTGTATGGTTTCACGTAAGTCAGTAAAACTTGAGTCGTCAAGTGTTGAAGTGCTCTTACACCTCCAAATCTGACCTGCACTGGGATGAGTAACTTCTATTTTCTAGCTGTTTTCACTGATGCCTTACGATCAGAACATAAAATCATCTAATGCACAATTCTGTGGATGTAAGTATTTGTGTGATAAAGCAAGTCGGCTTTCTAAGAGCAGCTTCTAGGTTTCACTTTTATCTCTTTATAAGGTATTGTTTACTGAAGCTGTTGAAGTTGTCTTCAATGGACTCAGTTAATTTTAGCAGTTGTAACACTTCCTCTTGTGCTGATCTTTCATTAGGAAACAGCTGGCACATGGTCATGTAAAGTACTTTGGAAAGCTGGTAGCTTGTATCTGCAGTCATGAGATGTGTGGGTTGGACTTACGCTAATGGTGGTGTGCACTGATGCTTAGGCGTTGCCTGGCTTTATATGTATTTCAGCAAACAGAACTTCGAAATGATGTGGAGGAATTTGCATTTCAGCTGTACTTCTGCAAGTCAGATGTAGGTTCAGTTAGGCTGAACAGGGACAGCAGAGGTCTGTGCTTGAGTTGTTACTGTGGTGGTGCTGTTCTTTATTTCAATATCAGGAGCAGTTGGACAGCATCCCACTGCTATGCCAGGGTTAGCCGTGGTGTGGATTCTGGTAGAGGATCAGGAAGGTGAACTTATATTTTGGCAAGAGTGCTCAGAGATGAGTTGGGTGAGCCATTCAATTTCAGTGACCTTGTGCTAATCCTGGCACACTCCTTAAACCTTTCACAGTTTTTGGTCTCTGCTTTTCTTCTTAATGCATGCAACTGTGTGCCTTAGATACTTGAGGGAGAAGTATCCTGAGGGTCTCCAGTGAGTTGAATGGTGCTACTGTGAGAGTGTAAATGAGTCGTAAGCATACTTCCACTGGAATATTGCTTGTGGTCAAAATCATCTTTATGATGAAATAAGTGTATCTGAATTCTCAGCCTTTGGTTGATTAAGGAGGGACAGTTGGGTCTGCTTACTGATGAGAACTGTGTTGCTGGTTGCAAGCTCCAGTCATACATTATGTTCAAGTTGTTGAAAACCTGTTGTACCAGTTAGGCTATAACAATTTAGGGTTTTCAGTTAAAGAGAACAATAGAGGGATAGGTGTCCTGTTTTCTGACAGTTAATGAGTGTTGTCTTCCAACACCTTCTACAGAGAGTCCTGTGACATAAGTGACAGTATCTGAAGTTTTGAGCAACTCGTACTTGAAGTTCCAAGTGATTATTCCTCATGTTCAGTATGATGTTTTCCATGCGAAGTGCAGAGCGAAGCATCTGTCCAAGCCTTGATTGATGCACGACAAACTGGTAGTGAAACCAATGAAATCAATTGAGATAAGCTACACCCTCATGGCTGTAATGGGGAGCAGGAACGGGCTGTTCTAGTTACCTGAGAAACACAGCGTAAACAGAGTAAGCTGTGAGTCATGTTAGGGTTTTGAGATGGGCCAAACAATTACTGGAGTGTACCACAACATTTACATGCTCACCATTTCAATGGTGCACATAGTTTTTACTTGAAAAGACTTACTATAATAAGAGAGCCTCAGTAGGACTTGGTGCTGCTTTCTTTCCTGCCTTTACGCAACTCATCTACTTCCTGTGCCTGCCCTTGCAGCTTGAAGCTGCATTCTCCCACTTAGTCCCTGTCTTAGCCTCTAGATTGGTGTTTAATTTGATAAAACTTATTTTTACTGCTTGGTAAAAAGACATTTGATTAATAAAATATGTATTTAGTAGTTACCTTTGTTTGGGGAGGCAGAAATTGTCTTGTAATTGCTACTAACTAATGAGTAAGGAAATAAAATGGAGCAATGCTGTAAATGTGGCTAAGGGTTCTGCCCTGCTGATAGCATGATGATGGAATGAGCAGACCTTTGGATATCCTACAGAAGAGCAGACTGCGCTTTATTGTGGCTGAGTCAGGGTGTCAGGCCTTGCTCTCATTTCCTAAGGTGCAAGTCTGGGTTAAATCTCCAAAAATCCTCCTGTTTGTAGTGAAACACGTCTCACACAGTATTGGTCACTGTACTTGTGGTGAGCACTGCTCCCCCCTGGTTTGCTTTTGGTAAATGACAGATGGGTGTTAATTGTTTCCCTGCAAAGTCTACTGGCTTGTCCCAAGTCATTGCCTTCATGGTATAAATCAGTGATCATGTTCTTACTACTGCTTTTCTCTTTGCTCTGAAACAATGTATACTTTCTCTCTAGGACTTACTGTGGTTTCTGAAGTTACAGAGCTGCTATCCATTTGAGTAACAGACATGAGTGTGCTCCTCTGGAATTAAGCTTTCATCTGTCTTCTTGACAGTTTAATTAATGTTTAATGTATGATGGGACACTCTTGAGATGAAGTAACACAGTAGATATCAGATAGATGTGTTGGAAGTAGGTCACTTCTTGCTCTTTAAGGAAGAATCATTTTTTGTCCATAGAAAGGCATCCTAGCCCAAAGTGACAGAAGCTCCTGACTTAGTGGTCTGTTTGACCTGCCTCCTGTCAGTGTGTGACAGAAAAGTAAACCACTGAAAAATCCGAAATGTCTGCTGCTTAGAGACTGCCAGGATGGCTCCTTTTTTTACTGTGTAGTATATTATTTGCTAGGAAAGGGTAACTTCATAAAGCTTTGCAAAAGATTTCTAACATTGTATGTCAGCGCTTACAAAGAAGGAGTTTGGTGTGGTGACAGCATGAAATGGCTCTCTACAACTACTTTAACAGCTATTGTGCAGTTAATTTTGATGAGGAGTTGTCTGATAGCAATACTAAATAGATGCTGGGATCAGATCTCAAGTGATCTCATCCCGTGTCTTCAGAATGCAGTGAGTCTCTTAGATATGAGCACCATACATGGTGTGAGTGGTTATACTATTTTTGTTCACCCTTTCCTTCTGTTGCAATCAATCCTTACAGTAAACCTGCAGGAGGCAAGCTCCATGTTTTAAGCTTCAGTTTGTGCTAGAAACAGCCAACTATTCACACTCAGGAACTATTTTTGTTGAGTCCTGGAGCTAGGAGTGGGAAGATGGTATTGGAATGAATAACGGTCTTCTGGAAACAGTATGATCTTATTTGGACTGTCAGGTTTAGATTTAAGTCTAGTTATGCCCAGCACTGTGTAGGCCCCTTTAGTTGAAGAAGCTGTGTGATGAGATAACTCCATGTAATGGGAATGGGGCCCAAAGACACTACATAATCAGCAATCAGAACGTGGTCTGTGTGGAGTAATCAGCTGTGTCTATGAAAATTAATTTTGCTCTGGACTGCAATGAACCAATGAAGACTGTGGCTAGCCCTTCCTGTTGCAGTGTGAGGTGCTGAGGGCTAAAAGCAGGAAGGAGAAACTAGCTGATGAAAGTATCTGTTACTGCAAATGGTGCAGATCTGCTGTATGGTGATGAGGGGCTCTCTTCATGGTGGTGTCTGACAGTGTCACCTGCTGTTTAAATGCCATAATATCCTTTAGGAAAGAAGTGAACAAATAAGAATGGCACATCAAAATGTGGTGAGAGTTCTTGTGAGGTAGTGTAAACAATTGCTTTGCTCCAAAAAGGATATCGGAAGGTATTTTTGAACTTGAACAGCAGTCTTATTTGTTAGTGTGTTATTGGGACTCATAGGCTGGAGTAATATGTGTGTGGAGTAATATCTTGGGGCCCTTTGACTTCATTCGATATTAATCTCTCAACTGATGCACTATTACAATAGTGGTTTTAATGAGCTTTAGGACTGCGTTTTGCATTACCATCTTGTGTTATGAATTGGTGTAGTCTCAGCAGATACAGGTAAGAAAAAAGCAGCATCAATCCTTGGTATGGAAGGATGTGTGTCCACAGAAGACAGAGGCTGCCTGTGCTCAAGCTGTGGCTGGGTTTCTGTCCCAGTAGATTTCAGTCTAAAACATTTACAGTTGTCGAATGTAGAGTTATGTGAATGACTGAAGCTAATTATTTTGAAGGCAAAGATGGAAAGAACAGAAGAGGGGGAGAAAAGGAGAAGGGCATGACAGGGTTGCTGTGGAGAAATATCCTTGAGATAAGCATCTGAAGGATACTGAAAGAAAACATGAATCTTGTGTCCAAAAGACACGCTGTTCTTACCTTGGTGTTGGTTTGTTTTCTGTGCGATATCTGTGACTGTGCCCTTTGCAGCTCTATCAGTAGATTACAGAACAATGAGCTGCTAATTGCACCAATTCTGAGTCTTTAAATGCTGTTTATTTTTACTTGGTAGCAGGATAGGAAGCCAGAAATGCCCAGTAACTTCTTGATGGATCGCTTCCTTTGAGTTTTGAGTTGTATTAATGAGCTGAAATAACAGGCTGATATAGGTGGTTGGCTATCATTTGTACTGAGTAGCCCCACATCCCACACAGTTAAGTTTTGTAACCAGAAGAATGTGGTGGCATATACACAGTGCAAAGACAATTAGACCAAGTACCATATGTAGAGTCAAGTGATAAAGAATTATGATTTCTAGTGTTCTGCGTTGTCTTCATTTTCTATACCAATGAATATGTTCAAGTTCATGACTTCGGTACAGAGTAATCTCATAATTCACTGGGACACCTTTGACATCAGGGTTTTTAGGTGTCTGTAACTTTGTTTCCAACAGACCTGCTGGCTTAGGTTCCCACATCCTGGAACCTTTCTCCATTTATGTAATAAAGTTCTTCACTATTTCAGTCTAGTTTTGGTCTCTCAAATTGCTGTGGCCTTGCTGTGCAGGACTTGAAAAGCAGTGATATTAACAAACTACATAGCAGAAAAAGAACAGAAGTGAAATAATTGGTGGAAAAAAAAATAGAAGGAATGTCGTGGCTAAATAGGGTCAGCACAGGAGTGTTCTAGTTGGTACGTGTGGAGGCCCATAGTGTGAGAACAAAAGATGATCTAAATAGATCTTTAAATATTTGTAGCTGTGTAGTTTTGAGCAATTCTTTCTGATCACTGCTTCACTGCATAGGGGATTATCTTTATGCTTCAAGGTTGGCATTTTTAGATGAGAAAAGAAATGGCAACCCTTGAAAAAAAGGAACTCTTGTGTCTCAGGGCTGGGCCTACCAAAGGATGATGTGATTCTTTGGTAGGCCCAACAGTACATGGCTGGTGTTAGTGCTGGGCATGCTTAGCACTGGTTACTGGGGCTTGCACACAGCAGCTGGCACCTAGGCTGGTTCCTGCTCCATTGTTGTAAACACGCCTATGTTAAAAATGCATCCAGTTGTCCACCAGAGAAGTAGCTGAAGCAGGAAGTGACATGGTGACAAGTGGCTGTTACTTGTGTTATCTGACAGTATGTGAAATGAGGACCAGCAGAGTCTGATTGCTTGTTGGACATGAGTGAGGTGACAGAACACTGGTTGCCCAAGGAGGCTGTGGCATCTCTGTCTGTGGAGGAACTCATGACTTGACCAGATGGGGTCTGGCATGGCCTGATCTAGTTGGGTTGAGTTTTAGCATGTGCTGTGAGAGAGCAGTTTGCATGTGGGGGCTGGCACTGTGCTCCCTGCAGCACCTGCTGCCTTCCTGGGGCTGTGCCCAGGGAACACGCAGCTCCCACTGGCCCATTTCTGTACTCTGTGTGGAAGGCACTTCTCAGAGTTCTCTTTTTGCTCCCCAGACTTGTGGATTACTGGTTTTAGCCTCAAACTTCAACACTTAAAGAGCACATTTTTATAGGCTTTAAGAAGCTTTTGTTTATATGAACTTTTCAGGTTCGTACTGTGAGGGGGGGAAAAAAATGTGTGTGCCTGCTGAGGTACAGCATGCATTTTGGTTCCCTGCCATTTCTATTCTGCTGGGACAGGCCTGAAATTTGGAAAGGAACTGCAAGAGCAGGTTAGGTGGAGGCTCATGCACGTGGCTTCCTAGGTGTTGCAGCATGAAGTGTGCCTGTGGGGCAGATGCAGAGAAAGGTGCCCCCCTTCATGCACACTAATTGCCAGCGCTGTAAACCTCTGAGGAATTTCCTCTTTCTTTGGCTCACGTCATCCTCAGCAGTGCAGGATTTGTAATTGGAATGTTGCTTATGTTTTATTGTGCCTGTGAGCCAGAACAACTCTTTCCTTGTTCTGTACTTGTGTAGCTCAGGTAGGGAGCAGTACCAGCTGGCCTCAATGAGAGTTCACTTAACTGACCCCTTCTCAGTTGGTTAGGAGAGCCTCAGGGCCGTGCAGTACGGGATGCTGTGTGTGCTGGGCAAGGGGTTGGGATGGCGTTGCCTTGAATGCAGGGACTCCTGCCAAGGGTCATTTTAAATAGACTTATTTTGGTGGATTTGTCTATTAGAAGGTTATTGTCAGGAATGCATCCATAAACTTGAGTAAACATGACTGGTTTGTTTTTGTAGGATGTGGGCGTTACATGTAACTAAGTAGATGAGTAGATTTTTGTTGCCAAGTTATTGATAGCAACAATAGCCAAGCTGGAGTATATTAAGTATATTAGGGACAGAACCAGAGATGTAACTTTCTCACCTGAGATAAAACAACTTTATTGGAGTCTGTGATAGTTTGCATAGATGACACTGTGCATAATGTGCTGTATTAGAGCTAAATAATTTGCCCCATATTTCACTGTCAAGTACCACATAATCCTTAGCTTTCTAATTGAGCAGCCTGTAGATACTGTACATTTTGGTTGGGTTTTTTGAGAATAAACATGGAACTTTTTAGAGTGTGGATAGGGAACATGAAGGAGACACTACAAAGGCGTATGAACACTTCAGAGAGCAATAAACACACCAGAGTTCTCAGCTTCCTTTGTTTGGTGCCTGTAGGTTAATCTTGTTAGACTTTGCTCTATTGAGGATTTATACTAATTATGGTGGAGTTTAAAATAAAATAGTAAAATGAAAAAAATTAAGACAGACTTTAATTAAAAGAACTGAGCAAGTCCTGTTGATTTACTTAGCAGTTGTGCAAGGCAGTCTTGCAAAATAGGTGTTTAGAAGAATTTTTGGTGTATGCTATAATATAATAGCTAAAATATAATAACATACCTTGAAGTGCTCAGGAACTTCTGCTTTCAGATAGCTCTTGCATCACGCAGTGTCCTCTTGGGATTACCCACACTGAGTGACAACAGAGGAACTAATGCCCAAATGAAGGAAAGGGACATAACTTCCCCTCAAATACTTTGTTTTAGAGCAGAAGTGTTGGGATGGACTTCCTTCCCCTGTTCTTTGCATCCTGCTGGATGAGCCAGCAGCACTGGGGGCTTGTGAAGAGGATGGGCAATGCCCACTGGAGCAGTGCTGCTGGGCCTTCCATCCTGATCCCGCTGCTGTCTGTCGCTCTGTTTATGAAGCAGGTTTGTCTTGTGGCTTCAGGTCCAAGGTAATACATCCTGCAGAGCTTGCTAGCCTGGGCATTGCTTGCTTCTGTGCTTTGCCTTTGCAGGCATGCCTCGATTGTTACACACCGATGCTCTGAGGGGTTGCTTTAATTTCCCATATATTAAGTGTTTTTTCACACACAAAGATGATATACTGTTCTGTTGCTTTGAATGAAAAGTATAAGCCCTAAACAGTCATGCTGTTGCCTCTGTATTTCCGGCTTGTTTTCTACTGTGCTGGCAGTTGTATATCGTGTTCAGCTCATGGTTAATTTTGTGTGTGGGTTGTCTGATTTCCAGGGCAGTTTGTAGAAACACATGCAGAAGTTAAGGACAACTGTGGTGTGTGCGGCGAGGAATTGTGTCAGCAGTTAAACAGTTAATTGTTAGTATGATTCAGGATAAACCACTAAAGAGTAAAGCTGAGACTGCTTAATTGTACTGAAATAATGTAGACTTGAAGTAGAGCTAGAAAATTGAAGGCTTAGAATTATTTTCTGCCATGATTCTGTCGCATCTCCCAGGCTCTCCTCCGGAGATAGTTTAATCCCTTGAGGTGTAATGTGTGTTTGAATAAGAAAGTTTTGGGGATTAAAACAAAACTACTGCCATGTTTGAGTGTAGTTTTTCTGTTCTTTTTATTATGAAGCTACTAAGAACTTGTGAATTCTNNNNNNNNNNGGTAGAGACCCTTGGAAAGTTAAGTAGGCCTTAAAGAAAAAAATATTTGAAAGGGCGCTTTAAGGAAATGTATTTTTTTTCTTGGCCAATGAATTTCCTGTTCGGCCATTCTTCCCCAGGGGGCTCTCTCCTTCCGGGAGAATAAGTTTTGAGTCCCCCTTGGAGGGTGTAAATTGTGTGTTTTGGAATTAAAGAAAGGTTTTTTGGGGGAATTAAAAACAAAAACCTACCTGCCCAGTGTTTAGAAGTGTAGTTTTTCTCTGTTCCTTTTTTATTATGAACGTTACCTAAGACCTTGTGGAATTCCTGGTTGACAAACCAGAGCTCTGAATGTGTGTGGTGATGTTTGTGTTTTCCTGACTTCACTCTCATTGTGACCAATATGGTACTTCGTAAACCTCAGCTGTGCTGTTGTTAGCTTGTGAGTTGCTATATTTCATAAAGTCAAGTGTTACATTTTCTCCCAACAG
Seq C2 exon
AAAATCTTTAAAGCTGGGGATACCAACCAGGATGGACAGCTTGATTTTGAAGAATTTATGCAGTATCTTAAAGATCATGAGAAGAAAATGAAACTGGCATTTAAGAGCCTGGACAAAAACAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001938:ENSGALT00000003000:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(66.2=77.0),PF137911=Sigma_reg_C=PU(38.3=75.4),PF102234=DUF2181=PU(29.5=59.0)
A:
NA
C2:
PF134991=EF-hand_7=PD(31.0=51.2),PF137911=Sigma_reg_C=FE(35.0=100),PF102234=DUF2181=FE(34.4=100),PF134991=EF-hand_7=PU(26.9=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]