RnoINT0136920 @ rn6
Intron Retention
Gene
ENSRNOG00000020470 | Slc25a24
Description
solute carrier family 25 member 24 [Source:RGD Symbol;Acc:1311982]
Coordinates
chr2:211930326-211939524:+
Coord C1 exon
chr2:211930326-211930680
Coord A exon
chr2:211930681-211939397
Coord C2 exon
chr2:211939398-211939524
Length
8717 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
TGTTTGTTTTGTTTCTGTAGAAA
3' ss Score
9.43
Exon sequences
Seq C1 exon
CTCCGCCCCGAGCAGCAGCTGGGCGGCCACACCCTGTGCCGAGCTCGGTTCCTGTGAGCCAGAAGCCTCGCCCCCCGAAGACGCTCCAGACGCTCGGAGGCCACCGCCTCACTCCACCAGGCCTCAGCACTCGGATCCTGCCTCGCCAGCTCGCCGCGAATTCCCCCCGACCATGCTGCGCTGGCTGCGGGCCTTCGTGCTGCCCACCGCCGTCTGCCAGGACGCGGAGCCGCCCACGCGCTACGAGACGCTCTTCCGGGCGCTGGACCGCAATGGGGACGGCGTGGTGGATATCGGAGAGCTGCAGCAGGGGCTGCAGAGCCTGGGCATCCCGCTGGGCCAGGCCGCCGAGGAG
Seq A exon
GTGGGTCGCTGCGGGGTGTTGGGGTGGCCGCTGACGCTCCCGGGACACAGCCAAGTCCCGGGAGGGCGTTGGCCTGAGGCCAGGCAAGAAGGAGGAGGAACTATGCCTGCCGGCACGCTGGAAGAGCTCCAGAGAGTTGGATCTGGAAGGCAGCGGGTGTTTTCCCAGATAAATTAGTGTTGCACACTTAAAACTTTCAACACTTTAGTTCTGAGAGCATCTCTGGTTCTTGGTTCATCACCTGTCCTGTCCTTTGCAAACTTCTCATGATTGTCCTGCTGTCAGACTTGAGTGAGTCCGGACTTGAAGTAGCTTTGTTACAACTAGAGTTTATTGTTTCAAAAATTTTTTTTGTTAAAACCGGCCATGCTCCCAGCTGCTAGTCGAGGTAGAAAGGCCACTTTCCGTTTTTATGACATTCTAAGTTAGTGCCCTGAGAGCACACATTGATCTTAAGGGTTGACCTGTTGCAAAGCAGTTGGGAGTTTCTCTGACTCATATGAATTGTGCCTCTGACATCCAGGCCCCTTGGCAGGGTGGGGACACTAGATCTGGAACTTGTCCAGCCTGCTGTCTTACAAGAGGACACTGACTTTTCTATCTTAAGAGGAACGTGCTTAAGTTACTGAGGGGGCCACCAACTGTTCTGTACCTATATTTAAAACTCCTCCCTCAGTCATTCAGTGTCAATGGCATTAATGGAGGCCTCTTCACTTTAGTTTGTCCTCTTAGTAAGTTACAACTTTGTTTGTTTATTTTTTGGAAGCTACCCATTTTGCCCAAGGCAGTATTATATAGAACTTTACAGAACTGCAGGGTCCCCTCTTCTTCCTGATCTCTTCTCTTCCCATCCTCACTCTGGCCATAGGTTTGCCTATTCAATGCACTTTCTAAAAGAACAAGTTTGAGTGTGTGTCCTACTTGCTCTGGGTTGACTCATTTCCTCCCGTTTCATGAATCAAAGGCCTGCCTGGCTACTTTTGAGTGATAATATCTCTCCAGTCACCCTGTGACTGCATCTTGCAGGCATGTTGCCGGTTATTTGTTGTTTTTATTATTCTCCTCCAGGTGTTTTCTAAAGTCACTGACATGATTTCTTTGGCTCATGTATCATTTTAGGTGTGCTTTAAATTTCCCAATATGTTTTCGTTCTTTGAAAATGTGATGCATCTGGTGCATGCCTACAATCCCAGGACTCTGAGAGCGGAGGCTGGAGAATTGTCACAAGTTACAGGTTAACTTGGGCCCTGTCCTCTCCTTATCTAAGTCAAACTGGAGTGAACTGAAACAAAGAGCAACAGACCTCAAGACCCCCAACCCCACAATAACAACAAACGATCCTACAATAACAGCCCCCAGACAACTTAGAGTCAGAGGAAAAGTCTGTCATTTAACAAAAGTATTGCATATAAATTACATAAAAACTATATGTATATGAATATAAACATATAGAACAGGGCAACCTATGTCACTAATAAATGTATATATTTTGTATACATATAACACACATACATACATACATATAACACACGGACACACACACACACACACACACACACACACACACATATATAGTTGACATAGTCAACTATTCCCAGCATTAAGGCATTCTTCTTCTATAAATGTTTCCATCCTGAAAGATAAATTCCTTTACATTTTTACTTTTTTGCTCTGCTCTGTGGACTGCCGTATGCCTTCACCCAGTCTACTGGTTCAAATGCTAATCTCTTCTAAAATTCCTTACAGACACACCCAGGAATGTCTTTATTGGATACCTGAGTATCTTTTTCATACTAATCAATTTGGTACATAAAGCTCACCATTATATCTGGGAAACTGGGGCCAATAAAATACTTCAATTTGATGACTCAGTCAAAAGATACTAACCAAGGCATGGTCAAACACTGTTATATTGCCGAGGACTGAAGAGATGGTCTATTGAGTATGCAGGGGTAAGAACTGTGAATGACTCCAAGTTCCAAGGCAATAGTTTGCCCCTAAGACAGGTGTTTACCTTGAGGGAAATCCCTATAGAGTCTCACCTAATTTTGCCTCTTTCTCACATTTCCAAGCTTTTTAGAATAAGTTTAGTACATAGAGGAGAGCAAGTGTCTATATTTAAGCTTTTCAGATTTTATACTGCTTTTTACATTTATTTATTATATATGTGCACAAACTTGTATTCCATGGTGCACATGTGGCGGTTGGAGGACAGCTTGCAGGAGGCAGTTCTCTCTCGGGGGAGCGAGCTCGGGTTGTGGGGATTGGCGGCAAGCACCCTTACCATCTTGCCGGCTCTAGTGTCTTTATATTTTGGTACAAAAAATGCCTGCATAGAATGTAGAAAGTAGGTATAAAGTGCACAGCAGTGAACCATTGGCAGGCCTTCCGAAATTACTGGCAGAAGACAAAAGACTGTGGCAGGCAGTCCTGAGGCAAAATTAGGAGCCAGCCTGATATGAAATTGCTGTGCTACACTTTTGATGCTCAGACCTCTACTTTCTCTTTTTAAAATTTATTCCTTAAAAATTTCATACATGGGTATAATGTATGCGTCATATCCACTCCGTTCCCTCTCTTCACCTTCTCCTAGCCTCCTCCCCGATGTATTTCCCTTTCAGCCTCACATCCTTACTGTTTAATTAATTAATAAACACAGCCTGTATGTGACTCGTTGTGGGGTCATCCACTGGCATGGACTATCCACCCTGCCAAAGGCAGCGGCTGCCTGTCCAAAGCTCCCCAGCTAGGGGTGGAGAGTCAGGAGCCTGTCCCACTCCAGGCTCACGCTCCAGGCTCAGGTTTTTTAACTGGTTTGGTGTTTCATAGGCTTTGTGCAGCTAACCACACTGCTATGGGTTCATGTGTGCATCAGCCACATCAAGTGTGGAGAATGGCGTTTCTCTGCACTCTGTGCTACCTCTGGCTTTTACAGCATCCTTTGTATCAGCTTCCATGATATTCCTTTAGCCCTTGACTATGAGGTTAAAAGAGAAAATTCATGCGAGTTCTCCTAGGACTCAGGGTTGTGAACCCAGGTCTCTTGCAAATGCAGCTAGTAGTCTTAACTTCTGAGCCATCTCTCTAGTCCCACAAAAAGAAGGCTTTATTGCTCATGGGGAACAGGGTAAGTATACTGCAGAGAAAGCGGAGTCACGCCTGACATATTCGGGCAGAGAATACACCTCTACAGCAGGTACCCATGTGACCACACGGAAAAGACCCGAGTTATCACCAAGATAATGAGCAAAGCCAGCCGATAGGATTTTCAAGGTTGATAGGGAAGAATAAGTTACAAGGCTGATAGTATCAGGTTATAACATGCAAGCATTTTATCAGACATCTCTCTTCACTTTTGGAAATGGCTCGGATTGTTGTCTGCTTATTGACTTTTATATAGGTAACTCTTATGCTAGAGTTTCAGGGATACACTGATGGCTCCTCTTGGTCTCGTTCACTGCTGTGCCCCCAGCTTAGTGAACATTGCCTTACAGTGTTCGGTGGCTTCAACTAAATAGAAATCTTTATACTATTTCGGGGGGGGGGATCTTTCTAATCATCTCCACTTTATACTTGAAGCCTCTAAGAATTAAATAACTTGACCAAGACTCTGATTCTAGCATTTGACCCCTCGTCTGATTCCATAGCCCGTAATATAGCATAACTAGCTAATGTATGACAGACAATGAACCATGCCTCTCAGTAAACTTCATTCAACCAGCAAACCCTTTCGCTGTTTTCATAAATCCAATCAGAGAACTCTAGCCTCACTGTTTAAAAGGTAAAAAAAGTTTGAACTCAGAGTGAACAAGAGAGGTTAAGTCACCTCTTACAGAATGTCGCTTTGTGGAAGCCTACTTATCTATATGGGTAATAACTAGAAAAATTATAAATAAATAATTCTGAATTGGTTAGGGTAAAAGAGAGGAGACACTTCATACAACAATCAGTAATTTACTGGAAGAATGAGAGAAATCAGAAGCAGAGAAAGGGAAATAAAGAGATACGCGTCCTTGCTGTAGTGAAGCCAGGGGACACAGGCTGCATCCTCACGAAAGCTAAGCGATACAATCCGTCCACACAGTGGCCTTCTCCAGCTTCAAAGCAAGACTGCAAAGCCATGGCAAACAACTTCGTCTTAAAATTGCCTGGAACCGAGCACATTTATTAAATCTCTAGCACTGAACCTGAGCTTTACTCTCTCCTGCCCCATTCTCTCTTTCTCTTCCATACACAGAAAATATTGCCACAAAAGTAAGTGTGGGCCAAAGAAGGCCCCCACCCCATGGTAAATTCACCCAGGCTGTCCTCCCCTTTATTAGCTGTCCTTGCTTTATTTGTAATTCCAAATTCTGGAATTAGACGAGGGCGGTGCTTCTCCGTCTTCTAAGCGAAACCATAGGAACAAACACACTTCCACCTAAGTCCCTTGACTCCCCATCAGCATTGCGCTGTGCTCCTCATGACTTCCGGGTCCAATCTCCAGTGTCCCGTGACTACTGCTTTCATCAGAGTATTAGATAATACATAAATATTAGGACCAGCTCTTTAAAATGTCTAGGATAACCTTTGACTTAAAAGCGAAACAGAAAAGCCAGAAAGAGGTTGCAGAAGGAGATGGGTGAGGGCAGAGGAGAATACGATGACATTAAATGTGGCAGAGATTAGAGATTTATGGGAAGTGAATAGTAACAAAACACTGTCCCCTGTTCCTCAGACCGCCACAGCTCACAGCCATCTATACGACCAATTCCAGGGGACCCTATGCCCTTTACTGACCTCCCCCAGCACCAGCACTCGTGAAACACACATAAAGACAGATGCAGGCAAAATGCTCACACACAAAATAAAAACGTCTAAATTAAAATAAAATCCTTTTTTTTTGTGGGATAATTCTTTCACGATTGGGCCGCAGACAGTTTTGTGAAAGAGTCTGAAATGTTGGCCCTGCTCAGCAACTCTTGGGAAAGGGTCTATTGCGAAGTTTACAGCAGTCCAGCCGCTGTGCAATCTCCTCCTTGAGGGGCCTGTCTAGGATACGTGATGGTCTCTGTCCATCTCTTCGCACTCAGTGTGATGAAGTATAGAGCCAAAGTTAACCGAGAATGGCAGAATTAAATTTTCTCTTGTGAATTTTAATTCCTAATTAAAATATTTATTTATTCATTTAATTTTGAGTGAAGGTCTCATTATTGCTTTAGCTCAGGTTGGCCTGGTACCTTGGGATCCTTCTAGCTGATCCTCAAGTGTTAGGTGAGTACCACCTCACTGGGCAATGTCCAACTTTCCCATTTCACTATTAAAAACACTAAGTTTGGAAAATAAGTTACATAGAGCAGGGAGTTTTTCTGTAAAACTGCATTTCCACAATTTTACTGGAGCAGGATGAGGGGCCACAGATAAACAAATAAGGGGTTCAAGGGCGTCCCCTGGCTCTGGCGGGGGTGCAGATTTAAAAGGAAAACAAAACACAGATACAGATAATATGTCTTCTGCCTTCTCATTGGAGTCCAGCTGCCTTCATTTCTGGCCATTTGGGGATTATCCTCTTGGTGCCTCTCAACAGGTGCCCAGAGGAGCAATTTTGCCCTCAGAGCGACTATAGATTTTGGGTGAAAATAAAAGATAAAAAGATACCAGGAGGTGGAGATGGAGGGAACACAGAAGAAAAGGTCCACACAGGCTATTTTTCTCTCTGTTTTTATGACAGCCACCCTGTGCCTCACCCTGAAAAGAGGATTCCTGGGCAGGTGTAACCTTCCTACTGACTAAACCTGGTTGGCTCAGATGATCTGGCCTTAAGCTCAGCGGTGGAGTGATTAGTGATTTTCCAGCGCGTGCGCGTGCGTGTTCTAACATATTCTTTCCCCAGCACCACAGGAAACAATGATAACAACAAGCCACAAAACACATCCGATCTTCCAAAAGTGGTCAGGCCACCTCTACTCCTGTTAGCGGATTATGGAGCAGTAGCCCAGTTCCGAAACTCTGCTCTTGGCATTTTTTCAAAACAAAGACAAGACAGAAAACAAGATCCCCGTTTTAGAAGATCAGGTCTCTGGAAGTTTCTGGCAGGAGGGTAGGGGAGTTGGGCATGGCTGGCTCTGTCTTGCTTTTGTGGAGCGTCTGATGGAGGCTCTGGTGTGTGGACTTGTGGGCAGAATCCCTCTCCCTGAGTTCTCACTGGTTCTTGTGCTCCTTTTATTCCCAGAACAGTTAGGATGAGCACTCCCTCGGGCGCAATGACCCCTGCAGGTAGGTGCTTTGCTTTTGGCCCTTCTCCTTCCATGGGAATATATCTACTACGTCCCATCCCAGGGACTTCTGAGCTTAGAGGGCCACTGCAGGGGTTATCTTAGCCACAGGAGATCACAGATAGATAGCTACTACAGCTTTTTGGTATCTGGACCATGTTGAAGATGTCCTTGAGCTTAAGAAAGGTCTGACAGGTTTAGGAGGTCATTAGCCTCTGGAGGATGACCAGGTGACCTTCATGAAGCTCAGGGTCCGGACCTAGGACCTCTAGAGAGGCCTCCTGAAGCCCAGTGAAGCCAAATCTCAAACTTGACCTTGGCCGTTTGAGTTGATGCTTGTTTACCTGCTTTTGTTTATGAAGACTGATCCAGGGGCTGCTGATGTAGCTAGTCAGTAGCGTGTTCCACTAAACCAGGAACACATAGACCATTGTGGTGGTGCAGGCCTTTAATCCAAGCAGTCAGGATGCAGAGGCAGGAGGATTAGAAATCTAAGGTCATCCTCACAGCTAACACCCTCAAGAATACTTCTGAGTTTTCTATGAGACTAGAACAAAATTTCTGATGACTTTTGCTCTTGGCTATAGTTTTGTGTTTTGGAACTTGCATGAGCTTTCGAAACCTCAAAGCCCAGGAAGGCATTGCCCCCTGATCCTTCTCATTGTGGACGGAGCATTCGAATCTATGACTCTATGAGAGCCGTTCTGATTCAAACCACCACAGGCTCTGGGCCCAAGATATGCCACGGGTTTAGAGCCCTGGGACATTTTCTCCTCACGTGTTTGGGGCTCAGTGGTAGTTGGGAACAATTAGGTTTTGTTTCTGCTTTTAAGGGGGTACCATTGGTAAGTCATCTTCATCCTCATCCTATTAGATGCAAAGACTGTTAGAGTCTTTAAGCTTCTGTTGACCAGTTGTCTTTAAAGCTGACTGCGGATGTCAATTACTGCACTGTGGTTTCTTAGTCTTTTGCTACGGTTGGGATAAAGGTTTCTCAAAGGTGGCCATTTTAATGACTTGGCGCTCTCTAGAGATCTATTGTGAGGTGGTGGTGGACCTCCTCAGGTCTTAAAGGTGGGAACTTTAAGAGTTGGGAATCTTCCAGATGGGGGTGACTGCTGGGACCCTGCTCTCTCTTCTTTCTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCTCTTCTTTCAAATACGGTGTGTATGTGTTTTTTCTTATTTGATGTCAGTTAGCCTTGCAGAAGGAATCCTGGATTCTGTCATAAACAAGTTCAGTCTTCTGAAACTCACTTTCTCCTTTTCAACATTTTATTTTCCTGAAAATCTTCTTGGCAAAAGGTTTGAGGCTTTGCATATCCATTGATTATGGATGAGGGGTCAATTATCAAAACTAAGAGAGAGCCATTCCTCCGGGGCTCTGCGCCAACCACCAGGGACATTCCACTAAAGAACTCTGGGCTTTTCCTCACATGAAGGTCACATTTCCTAAGCAGTTCTGTTGTGTCAGCTCTCATATGTCTGCAGCAGAAATTTCATTCATTTGGACCTAGAATTCAATTAATTTTTAAAGTAGAAATTTACATTGCATAGCAAGAGGTAAAAAAAGATCTTTTTATTATGAAAAATGATACATTTTAAAGTGATAATTTTGTATTGTTATTTTATACATTGGAGAGGCTGACTATACAGACAGATACTGGCCAGATCATAAATACAAATACTTAATGACTCAGCTCCTCCAGCTAGGAAACCTGGTCTTTAGAAATGACAGGCTTGGAGGAAGACAGTTGATGTTTCTAGTGATATTACAGGAAATTACATATTAGCTCCTGTTAGAATGCCCTCCCCAAGCGGCTGGAACTTGATTAGTCAACACTCCTTAAGTTAACACTAACAGCTCTCCTAATTTTTGTCTCCACTTTCAATTTTGGATTGAAGCCAGATATGCCCCCCATAAACCACACTGGGTTCTCCATTCCCAGCCAGCCATCCTGTGCTCAGGACAAACCTCCCCTTTCTTCTACAAAGCTTCCTGTGTTCTTCCCATCATTGCCTCTGTATCCGAGCACAGAGGACAGCAGCAAGCTCACAAGAAGTCGCCCTTGCTTTCCCCTTTGTTTCCACAGAGGGAATTATAAGATGATCCAAAAGAGAACCCTTAGCCTTCTCGTAAGTGTTAAATTGGCATCATCCACGGGTTGTAAAACTCGGGGAATCTTTACTCACCACAGGAAAGGCGGCAGAACTATGCCGCAATGCACAGTAACACATCTAGTTCACACTAGTATTTCTGTCTGAAAGAAAAGCAGCTAGTCTGCTTCTGGTCTACACACAATTAGTTCAGTACTTTAGCCCATGCTAACAATAGAATATCTTTAATTGATTTTTTTGTTTGTTTGTTTTGTTTCTGTAG
Seq C2 exon
AAAATTTTCACCACTGGCGATGTCAACAAAGATGGGAAACTGGATTTTGAAGAATTTATGAAATACCTGAAAGACCATGAGAAGAAAATGAAATTAGCATTTAAAAGTCTGGACAAGAATAATGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020470:ENSRNOT00000027765:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(63.6=68.9)
A:
NA
C2:
PF134991=EF-hand_7=PD(33.3=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]