DreINT0149982 @ danRer10
Intron Retention
Gene
ENSDARG00000008568 | slc25a24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:ZFIN;Acc:ZDB-GENE-040912-183]
Coordinates
chr20:34763874-34767357:-
Coord C1 exon
chr20:34766951-34767357
Coord A exon
chr20:34764001-34766950
Coord C2 exon
chr20:34763874-34764000
Length
2950 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
TGTTGTTTTTTTTTTTTCAGAAA
3' ss Score
11.2
Exon sequences
Seq C1 exon
CCAGCCTAGCCTGCAGGTCTACACATTAAACCCGAAACAGTGCTGAGTTTCAATAGACGGTGGCAATAAAACCATGACAACGATCGTCTAACATTGATAGTCTAGGGAGGGTCTGTTTTTTTTTCTTCCGTCCCAGTATAAACATCTGTGCTCTTCCGCAGCTCCACTGCAACCTTTGGATCGGTAAAAAAAAATACATAAATACAGCATATACATTCATCATGCATCAGCTTATAAGGAAATTCGTCTTCACCGAGTCGCATTGTTTGGAGGAGGAGGACAACACGAAAAGTTTCGCGGAGTTGTTTGAGAAGTTGGATGTGAATAAAGATGGAAAAGTGGATGTTTCCGAGCTCAAGACGGGCCTGGCTGCCATGGGCTTCTCTATGGGTAAAGGAGAAGCGCAG
Seq A exon
GTATTTCCAGTTCACTGCATTTCTGCTGTTGTTGACGCGCTTTAGTTTTACATCAGCGCATTGGGTTCTGTAAAAACCGCAGTAACCAATAAACTACGCTGACAGGCTCTCATATTGTTCGCATGCAAGGGGAATTTACTGTTCTACTAAGGAAAATCCACCATTTTGTTTGATGTAAAAACGCAGAGATATAAAAAATGGCTATGAGCTGAACCATTTAAATACTATAAGCAGTAGTTCAAAGAAATGATGGTAAATGATGCATGAGTGCCAGCCCACATCCTTCTTCTCCTCCACTTCTTCATCTATTGTACTATTTATTATAGTCATAATGCACATATTCAGGCGCGCTGCTAGCAATTTTGGTCCCTATGAAGGAAAATGTCAGCTTAGGGCCCCTGCAAGTACTGTTAATAGTAAAAAAAAAAAAAGACAGCTCATTTGGGGGCCCTAAATTGCATGGACCCTTAGAATTTTCCTAACATACCCACACTTAGTGATTGAGGATTTTATATTCACATATTCAGACTTTCTTCTTAATACAATTTCAAAAAAGTGTTATTTGCAAAGTATAAATAAGGGAATTATATTAACAACCAACGACTGCTAAAGTATCTTGTTCACAGTCAATTAAATAGTGCTGATGTTATTTTGAATGCATGCTTTTTCAGACAGAATATTCAAAGTGTTAAACAATATAGGGAGCATTAAAATGAATGAATGTGCCAAAATGAAACCAACTTGACCTCGATCACTTGGTGACTCCTGCACATATCAAAGTCACCAAACTTTGAATACAGAAAATGACAGATCATTTGTCTTTAAAATGGCTGTTAAAATAGAGTTTTCCCATTTGGTTTCAGGAAGTGCACATAATGCAGAAGGGTGGGTATAGACACTCCTGTAGCTGCTTGTGTAAACCCACATTCCTTTATCCACTGACATTCACTAAAACAGCTGATAACCCCACCTCGCTTAAGCAAATGAGACTCAAAGTTCAAACACAGAATGTGCCAGCAAACTCATCAGCTCACAGACAGAAGATTTATAATAGTTGTGTTGTTTTGTGTGATCTTTTGTTGCGTATTTGTTTTACAAGGCCTACTGTATATGCTTTTCAGTTTACTGAGTTGTGTGCTGTGGATTGGGCTATTAAATGCTTGATCCTGATTGGCTGATGAACATTCTCTAAGGTGTGCAATTACTGTCAGATAAACACACAGGTCTAGCTGAAGTTGTTCCAGACAATCTTGACTGCATTACAGTTCCATGTCACTCACTACTATGCTGAATGATTTCAGGTATTTCACAGCCTACTACAGATCAACTCAAAACTGAAGGTTTAATAAGAGATGCATAATAAACTCAATATACCACACATACGCAGGAGCTGTTTGAGGACAAAAACCTGAGAAATGTCTGGAAATATAAAATCTCTGTTTTATTTAGCACCTTATTTTTCGAATAATTCAACAGCCCATGATCGACAATTATTTCTGTACCCAGATGACAACAATGGATGAGCAAACTTTAGAAAAAAGTTAAGGAATCATTATGAAAGACTTTTTGCGGGTCAACATTTTTCTAAATATCTGTTCATTCAATACAGATTGTTAAAGTATCATCACAGATATCATTGGGAAACAGCTAAATCAATTATGGAGACTAAACTTTGGAGATAATTTAGGTTCAGCTATTAGTTCAGATCAGTGATAAAGTGAAATTCTTCATTGTGAAACAGGTTTAATTCAGCAGTTTTACATATGGCGAGAATGTAGTGGGTATTTTTTTTTTTTTAGCTCAAGTCAGTATTAGTTTGACCAATTATAGGTAGGGTCAGACGGAATCTGCAGAGGTTTTTTGCTATTTCTGCAGAGAATTTTGGTAAAAATTTTGGTAAAATTTTTGGTAGTATCATAACTAAAACCTTAATATATGAAATAAAAAATTATATCTTTTTAACTGGTATGTAATGTTTAAAATGCAAATCCAATCAGATTCACTTTATTTGGTAAATAAAGCAAGTTTGTCATATATCTAGTAAAACACAGAAAATATTACTGTACAAACTGCATTGTACATATAGATTTACACACATTTACTCAAGTAAATAAACAGAATTAGTGATGGGCTAAAAATTTGTTGTTATATAAAATAATTATAGGGTCTTCATTAGAACATCACAATGTGCAGAAATGTACAGTTATGAAAGGATTAATAGACCAGTTAAGAGATCCCAGTTTCTCTGGATTTTGGATTTATTACAGCAGGTGTGGGTTTGAACTAAATGTTCTATATGTTTTATTATATAAGGGTCTCATAACATTTCTTTCAAATATCATATATATTCATTCATTTTCATTTTTTCGGCTTAGTCCTTTAATAATCTGGGGTCGTCACAGCGGAATGAACAACCAACTTATCCAGCACATGTTTTACGCAGCGGATGCCCTTCCAACCCATCTCTGGGAAACATCCATATACACACTGTTTTTATACACTATGGACAATTTAGCTTACCCAATTCACCTGTGGCTTCACCACACAGAAGCGCCAACTGAACCAGCCGAGGCTCAAACCAGCGACGATTTTGCTGTGAGGCGACAGCACTACCTACTGTGCCACTGTATAACCCTTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACAAACAAAAAATTATGATATTGATATTTTACATTTGGAATAATTGTCATCAGCATTTTACAAATAAAGCAAAATTTTATTCAAACTATAATTCAAATAACCAATAATATTTTCAAGTGGCCTATTAATGTTCTCCATAGTTGTAAATATATTTAGGGGTTTTCTTGTACTCGTACTCAGCAAGGCACATTTACCAGAAAGCTCATGTTCCAGTGTTGTTGTTTTTTTTTTTTCAG
Seq C2 exon
AAAATTGTTACCTCAGGGGATACCGATAAGGATGAAGGGCTGGACTTTGAGGAGTTTTCAAAGTATCTGAAAGAACATGAGAAAAAACTCAGGCTGACCTTTAAGAGTCTGGACAAAAATGAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008568:ENSDART00000033325:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(65.7=74.2)
A:
NA
C2:
PF134991=EF-hand_7=PD(31.4=51.2),PF134991=EF-hand_7=PU(26.2=39.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]