HsaINT0151745 @ hg19
Intron Retention
Gene
ENSG00000085491 | SLC25A24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:HGNC Symbol;Acc:20662]
Coordinates
chr1:108728450-108735363:-
Coord C1 exon
chr1:108735118-108735363
Coord A exon
chr1:108728577-108735117
Coord C2 exon
chr1:108728450-108728576
Length
6541 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCTCTAATTTTTTTTTATAGAAA
3' ss Score
9.1
Exon sequences
Seq C1 exon
ATGCTGTCTTAGGCCTCTTCCCACTGGACGTGTGTGGTGGGCAGAGATCCCGTTCGTCGGTCGCACTTCCACCCCGCTGGGGCTCACTCAGGCCGCGGAGCTGCGAGGGAGACATCCTCGATGGACTCCCTCTACGGAGATCTCTTTTGGTACCTGGACTATAACAAGGATGGGACCTTGGACATTTTTGAGCTTCAGGAAGGCCTGGAGGATGTAGGGGCCATTCAATCTCTAGAGGAAGCGAAG
Seq A exon
GTGGGTCTCACTGGGGCTGTAATCAGAGAGACGTTGGGGCTGGGAGCCCTGGAGAGGCATTGGGCAGAGAGGGCAAAATTTACATGTTGTCAAGCTTGACCTGGGCCCACTGCAGTGTTCAGGTCGTTGACCAGCGTTACCGTTTATTAAGAATAACAACACAGCTAACACATTTCTCAAGTATTTTTCTCCGTTTTCTCCTTGGCTGTAGTAAAATCTCCAACTTCAGATTGCTCTCAAGATGTTGGCTACATACAGCCTTGTCTTAGGAGTCACCTTGTTCAATGTGCTCACCTGTCATTAGTCACCCAGAGGGGCGTCTAGGCTAAAGATGCGCCCTCCCCAGTTCAGAGAACTGGAATAATCACTCTACGTGTATTTGGGAGTGGGGTGGTGATTGGAAATTTTCTGATGTTATGTTTCGGTTTCTGTTCCTGGAAGGGGGCAGTGGAAGTGGCTTTTACTCTCGGGTTTCACTAGTGCTGAGGTTTCCTCATAATATGCCTTAATTGATAGACCCTAGTTATCAGTACCGAGCTTAGGCTAACCCTTCTCTTCCCCAGAAGGCTAACCTACAGGCTCCTTCTCAGCATGTTGTGCTTCGTACATACTCCTATTGCAGTATTTCCAAGTCATTTTTCATTTGGAATTTATTATTGTATATAATAATTACTTTATAAGTATATTTGCTCTTTGGATGTTTGACCCGGTAGACTGGGAGATCATGAGCATGTGGACTATTGAGTTTATTTTGGATAATTGGTACTTCGTGCCCAAAAAACTGTCAGTTGAGTTCTGTCATGTTGAAATTTAGTAAAACTCTTTCTATTAGCCATGTGAACTTTGGGAATATTGAAGCATCCATTCAGTCATGGGTCAGTTCTAGTTTGAGCACATTCTATATTCCAAGCCCCATACCCTGGTATCCTCATCTGTTATATCAGAGGCCTGGACTGTGTACTTTCTGTGGACCAATTCAGTCCAAAATGTTATTTCTGCAAAGCTTATCTGGATTTTTAATTCCTAGAAAAAAGCAGTGTTTCTCCTTTTAAAGTTAAGTGTTCTTGTTCAGGTGCAGTGGCTCATGCCTGTAATTCCAGCACTTTGGGAGGCCAAGGCAGGTGGATCACTTGGGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTAAAACCCCATCTCTACTAAAAATGCAAAAATTAACCGGGTGTGGTGGTGGGTGTGTGTAGTCCCAGGAGGCTGAGGCAGGAGAATCACTTGAGCCTGGGAGGCAGAGGTTGCAGCAAGCTGAGATTGCATCACTGCACTCCAACCTGGGTGACAGAGTGAGACTCCATCTCAAAAAGAAAAAAAAAAAGTTAAGTGTTCTTCATATTTGTTTAAAGACACTCTTATATTTAGATTTGCAAGTGTAAGTTGTATTTGTTTATTTGATACAAACTAGCCTTTCATAAGAAATTCTGGGTTAGCTATCAAGTCGAATCTTTTGAAACACATTTCTTCCTTATTGAAACAAAAGGTTTGTAGAGCTGTCTTGCATTTTTGGCAAGGACGCTTTGTGTACCTAGTGGTGACTGAGGAGGGTTCACATGTCAAAACCCAAGGGAGGGGTGTCCCCAGAGAATTCTGCACCAACCACACAGAACATTCTGTTTCAGAGGAGCACCATTGTGACTTTTCCTCAAGTGGCAGTCACATCGTTAGGAGGTTTTGATGTGAGGTCTCTTCCCACACGTCTCCACCTCCCCAGTAGGAAAATTTGTTTATATAGACAAAACTCAACTGATTAAAAAAAAAAAAAAGAAATGATACTTACATTGTCGTGTTAAGATACAAAAGCAATAACTTTTTATTGTGAAAATAGTCTGTTTTTGAACAATATATTGTTTTGTTTTTTCCTGTGAAAGTTGAGAAACTAAATATACGAAGAGATAATGGTCAGACCATAAATAAAAATAGAACTTTGACTCAAAATTTACAGCAGTCTGCCCAGAAAACCAGCCCTTTATCTAAAATAAACAGACCAGGAAACCAGCCTGTTATGTCAGACTTATAGGAAGTCAGGTTGCTATCTCTAGAGACAATACACAAAGCTATGCAATAACTGCTGTAACAGCCCCAAATGGTCAGAATTTGATTAATAACCGACAGCCCCCCTAATTTTTTTCTTCACTTCCAACTTAGGACGAACCAGAGAAAGCTAAATATGCACCACCTACTAATCAAATAGGGTGCCGCGTTTCTAATGAACCCTCCTACAGCTTCCCCAGGCCAGCAGCCCCCAATCAGGAAACGCCTGAAGCCTTCCCTTTTTCTCACTGTAAAGCTTTCCCACTCCTCTGCCTGGCTTTGAGTCTCTGTCAATACACAAGTGAGGGTGTCTGACTCCCTTGCTATAGCAAACTCGGGCCAAGTAGATTTTACTTTTCTCATTTGATTGGTCTTTTATTTCTAGAAGGAACATACAAGAAAATTTAAAGGGGAATCCATTCCTAATCTTTCATATTATAGTAGTCCCCTTTTATCTGCAGGGCATATTTTCCAAGACCCCCACTGAATACCTGAAACTGTGGGTAATATTGAACCCTATATATACTCTCTCTATATATACATATATATATATATTTTTTAATTTTTTTTTACTTTATCTTTAATTAGCTTTAGCTCTTTTTTTTTTTTTTGAGATGGAGTCTCACTCTGTCACCCAGGCTGAGTGCAGGGGTGCAGTCTTGGTTCACTGCAACCTCTGTCTACCGGGTTCAAGCAATTCTTGTGCCTCAACCTCCGGAGTAGCTGGGACTACAGGCGTGTGCCACCACTCCTGGCTAATTGTTTTAAATTTTAGTAGAAACGGGATTTCACCAAGTTGGCCAGACTGGTCTTGTACTTCTGACCTCAAGTGATCCGCCCACCTTGGCCTCCCAAACTGCTGGGATTACAGGCGTGAGCCACCATGCGCCCAGCCATAGACTATATATTTTTGATCTGATAACTGGTTCAGCTACTAAGTGACTAACAGGCAAGTAGCATCTATAGTGTGGATATGCTGGACAAAAGGACATTCACCTCCTGGGCAGGATGGCACAGAATGTTGAGAGATTTTATCATGCTACTCAGAATGGTGTGCAATTTAAAACTTATGAGTTGTTTGTTTCTGGAGTTTTCCATTTAATAGTTCAGACCATGATTGACCGCAGGTAACTGAAACTGTAGAGAGTGAAACTGTGGATAAGGGAGGACTATTGTATTGTTAAGTCAGACTCATTAGGCAATCATAACTCTTGATTTGCCATCAGAAATGCTGCAGAAATATGGGTTAAAAAAAACTGTTCAAAAATAGGGTCAGGGATGTCCTTTAACTTGTTACTTCCAAAATGTTAGTGAAAACTGTGGCCCCAAAGAGTGAAAGGAACAAATGACTAAGAGAAAATCTTGTTTTCAGGATGACAGATTAAAAAAGAAGCAACTTGCTGAAACACTGAAAATCTCTCCACTTGTAAGATAACACAAAACTGGCTAAAACTGGTTGGAATGAATATGGCCAACTCAAGTCTGCACAGAACTAACTTGGTGATGTTACAGCCCAAATTTCCACCACATATTTTATACTAACTCCCCCCGGATTTTCACACATGATCTGTGAGGTAGCATGAAGAGGTAACTATGCATGCCTAAGGACTTGGGAGACCTCCCCATTTCCTTCCACCAATCACCCACTAATCCCAGAATCCGCCCCCAAACCTTTTCTAATAACTACCTTAAAGCCAGCATAGGGAGACAGATTTGAGCTGGACTCCTGTCTTCTTGTGGGTCACCTTGCAATAAAAAGCTTTTCTTTTCTCAACACCTGGTATTATAGTATTGACTTCTAGTTCATCGGGCAGCAAGCCCCTTTTGGTCGGTGACTATTCTTGTTCGCTGATATTTCCATTGGCCAAAATATAAACCTCTTAGATGAAACTTCAGTACGTAAATGGCGCCACAGAATGCTGTGACATTTTTCTCTTGGATTATAACAGGTTACTTTACTGAATACCGTAGGCAGTTATAACACACTAAGTATTTGTGTATCTAAACATAGAAAAGATACAGTAAAAATATGGTAATTTTTTTCAACTTTTAGTTGAGATTTGGAGGGTGTGTGCACATTTGTTACAAGGGTATATTGCATGATGCTGAGGTTTGGGGTACAATTGAACCCTGTCACCCAGGTAGTGAGCATAGTACCCAATCGATAATTTTTCAACCCTTGTCCATTCCCTCCCCGTTCTTGTAGTCCCCAGTTTCTGCTTTTCCCATCTTTATATCCGTGTGCACCCCATGTTTTGCTCCCATGTGTATGTGAGAACTTGTGGTGTTTGGTTTTCTATTTCTGCGTTGATTCGCTTAGGATAATGGCCTTCAGCTGCATCCATGTTGCTGCAGAGGACGTGATTTTATTCTTCTTTATGGCTGTGTAGTATTCCATGGTGAAAATATAGTACTATAACCTTACTAAATCACTGTCATATATATGGTCTATCATTGACTGAAATGTATACAGTGCATGAATATATATATATATATATCTATAATGTCTTATCCATTTCGTGTATTATGAGATTTGATTTGCTAATATTTTATACAGGAGTTTTGCATCTTTTTCACTAGTTGACATTGCTTGTAATTTTCCTTTTTTTGTGATGTCCCTGTTAGGTTTTAGAATCAAGTGTATACCCGCCTCATAAAATGGGTTGGAAAATGTTCCCACCCTTTCTGTTCTCTGGAAAATTGGTGTTTTTTTCTTAAAGTTTGGTAGACATTATTGTTAAAACCATGGGGTCCTCGATTTTTCTTCATGGAAATGTTTTCAAATTACACTTTAAATTTCTTTAAAATCTGAGTATAGGGCTATCAGACTTTCTGCTGTCTTATGTCAGTTTTTAATAAGTTGTTTTTGTAGGCGTTTGTTATCTCACTTTCATATTTTTGATATAAAGCTTTTCATAATATCATTAATGTCTATAGTGTCTAGTAGTTTCCATCTTTACTTTCTGACATTGGTTATTTGCCAGTTTTAGGAGTTTATCAATTTTATTAGTCTTTTCAAAGAACCATCTTTTGGCTTTGTTAATCCTCCCAATGGTGTGTTTTCTTTCTCATTACTTTTTGCTCTTTATTTCCTTCAACTTCTTTTTTGCTTAATTTTAAAATAATTTCTTGAGATTGAGATAAGCCTCAATGATGGGTCACCGATTTCCAGTCTTTCTTCTTTTCTAATTATGCATTTTAAACCAGAAATCTTTCTCTAAGTGTAGCTTTAGTTGCAGCTCACAAGTTTCAGATCTGTCTCTCAGTCTGGAGGTTGGAGATCTGACCATGACCATGAAACCATCCAGTCACAATGTGGCATTATTTTTTTAATTTTTTTTTTTTTTTGAGATAGAGTTTCACTCTTATTGCCTAGGCTGGTGTGCAATGGTGCGATCTCGGCTCACAGCAACCTCCACCTCCCAGGTTCAAGCGATTCTTTTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCGCCACCATGCCCAACTAATTTTGTATTTTTAGTAGAGATGGGGGTTCTCCATGTTGGTCAGGTTGGTCTTGAACTCCCGACCTCAGGTGATCCGCCCACCTCAGCCTCCCAAAGTGCTGGGATTATAGGAATGAGCCACTGTGCCCGGCCCAACTTGGCATTATTTACCCAGAAGAGCATGACCATGAGAACAGTAGAATTTGTAAGCTTTGAGTGGGTGACTATGAGTGTCATAATAGGTAGATAGGTTATATTTTGGGTGGTGGTAGGAGAGGGCTTACAGTTTGCTATGACAGCTTTTTATATGGATCATCCTTAGTAAAAGATTATTTAATTTTTGAAATCAAAGGGGAAAACACTAGTTTAGGCTTTCTTCTTTCTTTCTTTTTTAGAGACAGGGTCTTGCTCTGTCACCAGGTTAGAATGCAGTGGTGCAATATTGCTCACTGTAACCTCAAATTCCTGGGCTCAAGTGATCCTCCTACCTCAGCCTCCAAGTAGCTAGTATTTACAGGCATGCACCAACACATCTGGCTAATTTTAAAAATTTTTTATGGAGATGAGGTCTCACTATGTTGTCCAGTCTGGTCTTGAATCCTGACCTCAAGTGATCCTCCCCCATCAGCCTCCCAAAGTGCTGCAATATTTTAAATCCTGTGGTAGGTCAAGTGGTTGTCTTCTATCTTGGGGTTTATAAAGTACATGTCAAGAAATTTAGGGTATGGTTAGATTAGCTTTAAAAATGTCATGTTTTATAAAAATCAATGCATCATTTTTCTGATTGAAAATTTAACACAAGACTCAGAATCTTTTTGCAGTAGTGGAATTACTTTTATTATAGATCTTTGCGATAATGAATGATGATACATCTGGCCAAAAATAGGTACTATAGTCTTTTAGGAAAACAGCTAATCTGCTTGAAATATGTGTAGAAATAATTTAGTGCATCAGCCCATATTGGCAATAACTTCTCTCTAATTTTTTTTTATAG
Seq C2 exon
AAAATTTTTACTACTGGAGATGTCAACAAAGATGGGAAGCTGGATTTTGAAGAATTTATGAAGTACCTTAAAGACCATGAGAAGAAAATGAAATTGGCATTTAAGAGTTTAGACAAAAATAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000085491-SLC25A24:NM_213651:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PU(60.7=88.1)
A:
NA
C2:
PF134991=EF-hand_7=PD(36.1=51.2),PF134991=EF-hand_7=PU(27.3=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)