GgaINT0036564 @ galGal3
Intron Retention
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19701375-19702905:+
Coord C1 exon
chr8:19701375-19701487
Coord A exon
chr8:19701488-19702732
Coord C2 exon
chr8:19702733-19702905
Length
1245 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCATTTGTTTTCTCCTTTAGCTG
3' ss Score
10.52
Exon sequences
Seq C1 exon
TCTCAACTGTATCATCACCAAAAAGGAAGAAGTGCAAGAAGTACAGGAGTGTTATCTCTGATATATTTGATGGGACCATAATAAGTTCAGTACAGTGCTTAACTTGTGATCGG
Seq A exon
GTGAGTAAGAAGGGGAAGGGGAATTTCTTTAATGTTTTTTGTTCTCAATACATACAGCTATGGCTTTACAGATGCAGTTGTTTTCTGGTAACTATCCTCTTGTGGCAGACATTCCTCAGAGGATAAGACTGTTAATGCTTGTTTACTCAAATGCTAATAGCTGCTACTATGAGCACCTTTTGTTTAAACTAACTTTCTTTCATTGAACTATAAACTTAGAGCAAAATGATAACATTCTGAGAATTGGTTTACAGCAGAGATGAAGGAAAAACTTTAATGACTTTGTTTAGATATGATTTGTTCCTGGTTAAGTTCTGAATATGCTAGTAGTCATACTTACTGTTGTGGTAACCTCACAAGCACATCATGATAAAAATAAGTACAAGTAGTCCAGTCATGTTGCTTTAAGTCTTACTGGCAGATTGAGGCTGAGAAAATTTATCTGTGGCAAAATCTAAGTAAACACATTTACAAGTAATATGGGTCAATAACTGCTTTCTGCAGTTGTCTTCTACTGCAAAGGTGTGTATTAGAAGAACAGCTGATTTTCTTGCATTATCTGCTTATGAAATTATTTGGAACAGCACAGATGGTCACTTAAAAATAATAATAAAAAAATCAATTAACATCTATAGTGGGCTCCTTTAATTTCAAAGTAGTAGTACCAAATAGTGGATATCCAAATCTTTGCATTGAGGGCAAGTTTCTCAGACACTGGAACAGGATTGCTAGGGCCATGATGACAGCACCAAGCTGCTGCTAGAGGTCAAGAAACATTTGGACAATACTCTCAGAAATATGATTTCTTTTTTTTTTTAAATTTTTTTGTGGTCTTGTGTGTAGCCACAAGTTGGACTCTGATCCTTGTGGTTCTATTCCATTTCAGGATATCTTATGAAGGTTTAAAAGAAACCTCACTCTAATGCAGTTTCATGTCCTTATGACTCCCCTTGTTTTAGAACTAACAACACTGAGACTTTGGGTTGAGCAAATTCAACAGCAACAACAAAGTTCTGTTTGTGCATAGTTGATGCTTTTACTCTGTGACTATATAATCGTTAAATCCAGAATGTTATTTTTCTACCTTTTTTTTTAAAATGAACCCCTCCTTTAAGTGGTTAACTTGCCACCAAGCGTAATCTGTGCCTCTATACAATGATTTAGTTACTGATAATCTTTGTGGAATGTAATTGCTGTTTCTGTTAAAGCTTAACTGTGTTTTATTTCATTTGTTTTCTCCTTTAG
Seq C2 exon
CTGTCTGTAACCTTGGAGACTTTTCAGGATCTGTCCTTGCCAATTCCAGGTAAGGAAGATCTTGCTAAACTCCATTCTGCAAGTCATCAGACATCTCTAGTCAAAACAGGGTCGTGTGGAGAAGCATATGCCCCCCAGGGCTGGATAGCATTTTTTATGGAATATTTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(7.0=100)
A:
NA
C2:
PF0044324=UCH=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAACTGTATCATCACCAAAAAGGA
R:
GGGGCATATGCTTCTCCACAC
Band lengths:
246-1491
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]