HsaINT0178917 @ hg38
Intron Retention
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77722024-77723443:-
Coord C1 exon
chr1:77723331-77723443
Coord A exon
chr1:77722197-77723330
Coord C2 exon
chr1:77722024-77722196
Length
1134 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
AAAACACAAAACAATTTTAGGTG
3' ss Score
3.86
Exon sequences
Seq C1 exon
CTCAGTCTGCATCTCCAAAGAGAAAAAAACAGCACAAGAAATACAGAAGTGTTATTTCAGACATATTTGATGGAACAATCATTAGTTCAGTGCAGTGTCTGACTTGTGACAGG
Seq A exon
GTGAGTATGAGGGTATTAGAATACACAGAAAATTCGTGTCAAATGATTTTTAAAAATGTGACAAGATGATGTGAAAAGTTTAATTCCTTCTCTTTGCTATTGATGAGCATACATGCATTTATTGTGTTTACATCAACACAAATTTGATTCTAGGTGTAGAATTTTTTTTGGAAGTAGCAGCATCCTGTTTAAAGGATGGTGACCCATCATTGGACAGGCACATATTATCCTTCGTCATCTATTTTGGTTACATATAAAGGTGAGAAGTTGCTCAGCAACAAGAATTGGTAACACCTGCATATTCTCCCAGGCTGATGAAATTTGTATACTGGGAATCTGTTGATATTCACAGGTACAAAGCTGTGAATGTATCTCTTACATTTGGTCATATATGGTTTGTAAATATTTTTCCATGTTTAGGATGGGACTCAGATACTAAAGGTAGTATCAAATTCATAGACAATAACAAAGCATACATTAAAATCATCATGAATTTTTTAATAACACTTCTTCAAAGTTTCTTTGAGCTTTTCTTAAGTACAGTTTTACTTTAGTGCAATGATGAATATGAAATAACATCTCAAAAACAAAAAGAAGATTTCAATTATTGTGTTAGAATCTCAAGTCAAATCTAAGAACTTTCAATCGGGTCGTTTTAATGTAGGTTATTTTGGTACTAAATATTTAAGTGGAATTATCAGGCATGTTTTTAGCTATTTAAAATTAGATGCCAGATTTTGTCTCACCCTTTTAAAAAAATATTTTAAAACTACCATCAAAGGTCAATTTTCAAAAATAAATACAATAGTGCTTAAGAGTTTGGACCTCAAGATGCAGTGGCTGGATTTGGGGTGTTTAATGCTGCAGTGTCTGTGATTGTAATGGGGATGCTAATACTACTGCACAGGACTTACGTGAAGATACCTGGTACAGAGCAAGTGTGTTTTGTTTTTTGTTTTTGTTTTTTTTTTTGCTATTATGACTATGAAAGCAGTTCAATTTGCGTGTTTTTTTTTGTTTTTTGTTTTTTTTGCTTATTTAAACATGCTTTGATCTTTAGAGTCTAAAATCTAACCTTGGAAATGTTTTACTGCATTATGTTCATCCCATTTTTAAAACACAAAACAATTTTAG
Seq C2 exon
GTGTCTGTAACCCTCGAGACCTTTCAAGATCTGTCCTTGCCAATTCCTGGCAAGGAAGACCTTGCTAAGCTGCATTCATCAAGTCATCCAACTTCTATAGTCAAAGCAGGATCATGTGGCGAAGCATATGCTCCACAAGGGTGGATAGCTTTTTTCATGGAATATGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254:ENST00000370794:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(10.7=100)
A:
NA
C2:
PF0044324=UCH=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCTGCATCTCCAAAGAG
R:
CACCCTTGTGGAGCATATGCT
Band lengths:
256-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains