MmuINT0171656 @ mm10
Intron Retention
Gene
ENSMUSG00000025437 | Usp33
Description
ubiquitin specific peptidase 33 [Source:MGI Symbol;Acc:MGI:2159711]
Coordinates
chr3:152373386-152374789:+
Coord C1 exon
chr3:152373386-152373498
Coord A exon
chr3:152373499-152374619
Coord C2 exon
chr3:152374620-152374789
Length
1121 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTAAAACCAAACACCTGCAGGTG
3' ss Score
5.18
Exon sequences
Seq C1 exon
CTCAGTCTACATCTGCAAAGAGGAAAAAGCAGCATAAGAAATACAGAAGTGTCATCTCCGACATATTCGATGGAACAGTCATTAGCTCGGTACAGTGTCTGACGTGCGATAGG
Seq A exon
GTGAGTATGGGGTGCCACAGCACAGGACGCTTCTGTCAGATGTTATTTTTAAAAACCTGGAGATAGGAAGAATTAAATAGCTTATTGCTATTGTGGACCACGCATGCATTTCTTGTGTGTCAGTTATACATCAAGTTTCCATGTAGAGTAAAAGTGCCACCCACATCCTTTGTGAAGGACCATGGGCTCTTTGTCTGTTTTGGTTACATGTAAAGATGAGAAGTTGCTTGGCAACAAGAAATTGTTAACAGTGCTTATTCTCCCAAGGCTGATGAAATTAGGTATGCCCAGAAACTCTTGTGATCACAAGCAAAAGGCAGATAGTGTTTTCTTCTATTTGCCTCTGCAGGTAGCTTGTAAATGATAGATGCTCCAATAATAATGCCAAATTCATAAATAAGGTCTTATCTCAAAACATAAATTATCATGAGGATTTGACTAACACCCAATCCTTCAGGATTTCTTAATTTTTTTTGAGAACTAATGTCTCAGAAATGAGAGAGATCAACTTTCAATTATTGTATTATAATGTTAAGTCAAATGTTAAGGACAGTTAAGGACTGCATGTGTCTGTCATGTAGGATTCTGTTAGTGAGGGTATTGTCATCATCTTAGTGTGGCGTTTACTCCATGGTTGCTGAAACAGAGTATTTCCCATGATGCATCCCTGTTGTGAAGTGCTGGTTGATGTCAGATTTGGTTTTCTCTTCACCCCTCTTAAACAGCCTGCACTTTCATGTACTTTACTTTGGAGGCTAAGGGGAGAGAATGCCTTGAGAACAGCTTGGATGATATAGCATATAATAAGGTCCAGTCCCTGCCAGCACCCCCCAAAAAGAGTGTGAATGTCAGTCTCTGGGGCCAGGAGCTGGATCCGTTGTGCTGCTTACCACTGTAACATCTCTGAGCTGCAGGAGTACTAATGGTTTGTAGGAAGATTATATTTGAAATAGTACCTGGTACAAAGTGAACGAGGCTCATTTCTATTTGTAGTATTCTAAAACCTGTTCGTTGTTTATATTTGCTTATTATAATAATTTGCTTTCATCTTTGGAAGAAATCTAACCCTGTAAATAACTGTACTGGATTCTTTCCATCCTGTTAAAACCAAACACCTGCAG
Seq C2 exon
GTGTCTATAACCCTCGAGACCTTTCAGGATCTGTCCTTGCCGATTCCTGGCAAGGAGGACCTGGCTAAGCTGCACTCCTCCAGTCACCCAACTATAGTCAAAGCAGGGTCATGTGGTGAAGCGTACGCCCCGCAGGGGTGGATAGCTTTCTTCATGGAGTATGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025437:ENSMUST00000026507:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(7.1=100)
A:
NA
C2:
PF0044324=UCH=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCTACATCTGCAAAGAGGA
R:
TCACATACTCCATGAAGAAAGCT
Band lengths:
278-1399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types