GgaINT0036575 @ galGal3
Intron Retention
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19714476-19715801:+
Coord C1 exon
chr8:19714476-19714544
Coord A exon
chr8:19714545-19715646
Coord C2 exon
chr8:19715647-19715801
Length
1102 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AACTTTTAAAATGCTTGCAGGTG
3' ss Score
6.46
Exon sequences
Seq C1 exon
ATCCCCCTGGTCCTATTGATAATGGTAAGATTGCAATAACAAAATGTGGAAATGCTGTGCTAAAACAAG
Seq A exon
GTAGGTGTCTGATACTAGTGCATCGTTGGGCTCCTTGTGATATATTTGCTCAAATTCAGTAGACTTATGAATTCTTATCTCTAACTGTTATGGCGAAATGGTGATACTTAATGAATCTGCATTCTGTTCCTTTTCAGAAATAAAAACTAAATTAGGAGTGCAGTTGAGAAATTGGCAGTTATTCAAAGGCTCTTTTTTTTTTTAAGAGAAATATGCTCTCAAAGAATTAATATCTGTAATAGGCTAATCCAAGTGCAGATGATAGTTTAAAAGCAGATGCACAGTACCTCTAAAATGGGCAAATTGTGCTTTTGGCTTTGTATCACTTTGTTTTTGTTGGGTTTCTCTTCTCAGAGTTGCTTGGCTTTTAGATTGTCATTTATCTGTGTGTAGTTATTTGAATCTTGAAATTAATTTGAAATAAGAGCTGCTTCTAATAGAAGGCAATCTTACTTAAATGTTGTTGCTCTTTTTTTTTTTGCAAGCTTCACTGTATATTGCAAATGTTCTCTAGCATGCAAAGATATGTTTTCTTAATTATTCTTTAGTCAAATGGTTAAAACCAACCATCTATTTGGAAAATTTTGGGTACAGAGAAAAATAATATAATGTGGTCATCTTTATGAAGATTTCGGGCTTCCTATGGAAGCATAATATCAATATCAATATATTAATTATATATAATATTTAAATTGCTCAACTTACTGCAGTGTTAAAATCGAGGAAAAAATCTAGCTACCAAGTAAAAGTCTATTTAACTTCAGCATACAGAAGGGACCTACAGGTGGCAGTCACTGGCGGTCAGTAGGTCCAACATGAATCTTGCCAATTGTGAAATGTAAAGAGCATACTGAAAACAGAATGAATTCTTGCACCCATGAGTTTTTGTAGTACATCTTAATGGTTTAAGCTTTTAACACAGAAATTAAATATAAGTCTTCAAACATCTGACTTGGATTTGGTAGCTGACATAGGAAAAAGTGTAAATTAGATTATTGTAAAATTTGAAATATATTCTTTCTTTTTGTATCTGTTACAAACTTCAAAGAGTCATGGAAAGATCTGTTTTAAATAGTAATTAAAACTTTTAAAATGCTTGCAG
Seq C2 exon
GTGCAGATTCTGGACAGATATCTGAAGAAACATGGAATTTTCTTCAGTCAATCTATGGTGGAGGCCCAGAGATTATACACAGACCACCTGTTCCTACAGTAGAACCTGATATCTTGCAAACAGAAGAGAAGATTGAATTAGAAACTCATTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(30.3=100)
A:
NA
C2:
PF063377=DUSP=PD(36.8=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCTGGTCCTATTGATAATGG
R:
ATTCAATCTTCTCTTCTGTTTGCA
Band lengths:
206-1308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]