GgaINT0036575 @ galGal4
Intron Retention
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17913096-17914424:+
Coord C1 exon
chr8:17913096-17913164
Coord A exon
chr8:17913165-17914266
Coord C2 exon
chr8:17914267-17914424
Length
1102 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AACTTTTAAAATGCTTGCAGGTG
3' ss Score
6.46
Exon sequences
Seq C1 exon
ATCCCCCTGGTCCTATTGATAATGGTAAGATTGCAATAACAAAATGTGGAAATGCTGTGCTAAAACAAG
Seq A exon
GTAGGTGTCTGATACTAGTGCATCGTTGGGCTCCTTGTGATATATTTGCTCAAATTCAGTAGACTTATGAATTCTTATCTCTAACTGTTATGGCGAAATGGTGATACTTAATGAATCTGCATTCTGTTCCTTTTCAGAAATAAAAACTAAATTAGGAGTGCAGTTGAGAAATTGGCAGTTATTCAAAGGCTCTTTTTTTTTTTAAGAGAAATATGCTCTCAAAGAATTAATATCTGTAATAGGCTAATCCAAGTGCAGATGATAGTTTAAAAGCAGATGCACAGTACCTCTAAAATGGGCAAATTGTGCTTTTGGCTTTGTATCACTTTGTTTTTGTTGGGTTTCTCTTCTCAGAGTTGCTTGGCTTTTAGATTGTCATTTATCTGTGTGTAGTTATTTGAATCTTGAAATTAATTTGAAATAAGAGCTGCTTCTAATAGAAGGCAATCTTACTTAAATGTTGTTGCTCTTTTTTTTTTTGCAAGCTTCACTGTATATTGCAAATGTTCTCTAGCATGCAAAGATATGTTTTCTTAATTATTCTTTAGTCAAATGGTTAAAACCAACCATCTATTTGGAAAATTTTGGGTACAGAGAAAAATAATATAATGTGGTCATCTTTATGAAGATTTCGGGCTTCCTATGGAAGCATAATATCAATATCAATATATTAATTATATATAATATTTAAATTGCTCAACTTACTGCAGTGTTAAAATCGAGGAAAAAATCTAGCTACCAAGTAAAAGTCTATTTAACTTCAGCATACAGAAGGGACCTACAGGTGGCAGTCACTGGCGGTCAGTAGGTCCAACATGAATCTTGCCAATTGTGAAATGTAAAGAGCATACTGAAAACAGAATGAATTCTTGCACCCATGAGTTTTTGTAGTACATCTTAATGGTTTAAGCTTTTAACACAGAAATTAAATATAAGTCTTCAAACATCTGACTTGGATTTGGTAGCTGACATAGGAAAAAGTGTAAATTAGATTATTGTAAAATTTGAAATATATTCTTTCTTTTTGTATCTGTTACAAACTTCAAAGAGTCATGGAAAGATCTGTTTTAAATAGTAATTAAAACTTTTAAAATGCTTGCAG
Seq C2 exon
GTGCAGATTCTGGACAGATATCTGAAGAAACATGGAATTTTCTTCAGTCAATCTATGGTGGAGGCCCAGAGATTATACACAGACCACCTGTTCCTACAGTAGAACCTGATATCTTGCAAACAGAAGAGAAGATTGAATTAGAAACTCATTGTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974:ENSGALT00000014598:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(30.3=100)
A:
NA
C2:
PF063377=DUSP=PD(36.8=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCTGGTCCTATTGATAATGG
R:
ATTCAATCTTCTCTTCTGTTTGCA
Band lengths:
206-1308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]