HsaINT0178927 @ hg38
Intron Retention
Gene
ENSG00000077254 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr1:77695987-77697931:-
Coord C1 exon
chr1:77697863-77697931
Coord A exon
chr1:77697475-77697862
Coord C2 exon
chr1:77695987-77697474
Length
388 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTCTTCTACGTAATTTTAAGGAG
3' ss Score
5.96
Exon sequences
Seq C1 exon
ATCCTCCAGGTCCTATTGACAATACTAAGATTGCAGTCACTAAATGTGGTAATGTGATGCTTAGGCAAG
Seq A exon
GTAAGTTTGACTCGTATTTAAGCTTTTACTTGTGAGTGATTTGTCACTGTTAGAAATATGTTATCATTAGTCATCTATAGTACTTTTTTATTCAACTGAAGAATGTAATCCATACATTAACTAGGGCAAGTAATGAAAAGCAGCCACTTTTTTTTTATCTGAGGAAAGGTCTTAAGGCTGTTGTTAAGAGCAAAGCAAAAGCATCTCTGACTTTTTAAGACAAGCCATATGTTTCAGCTTATAACAATATGGGCTGGTAGTCTGCAGATTCATGTTCCAGAAGTTCTCAATTATCCCGAGAAGATTCATGCTGGGGGGTACATTATGAACGCTTTTGCAATATGAATATATAGGTTTGTAAACATTATTTCTTCTACGTAATTTTAAG
Seq C2 exon
GAGCAGATTCTGGCCAGATTTCTGAAGAAACATGGAATTTTCTGCAGTCTATTTATGGTGGAGGGCCTGAAGTTATCCTGCGACCTCCGGTTGTTCATGTTGATCCAGATATACTTCAAGCAGAAGAAAAAATTGAAGTAGAAACTCGGTCTTTGTAATTTTTAGGATGTAGAGAGTTCTAATGAGGAATCATTTTCATGTGCCCTGACATGTACACATGCGAAAACATTCCTAAAAGCGTGTTTATTTGCTTTATTTTTTTTCATCATTTATCCCATTTATTTCTTCTTAGTGGGCATTATGGAAGAATATATTAAAATGTGTAATATACCACAGGTTGGTATATTTAGTTTTAAATACTTACCATAAAGTCTTTCAGTGTAATTTTTTTTTGAGACAGAGTCTTGCTTTGTCACCCAGGCTGGAGTGCTGTGGTGTTACCTCAGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCACCTGCCACCATGCCCGGCTAATTTTTGTATTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTAGTCTCAAACTCCTGACCTCAGGTGATCCACCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACAGCGCCTGGCCCAGTGTAATATTTTTGAAAGAGGAGGGACAATTGTGAAATCAGTAGGTTATCTTTAATCTTTACACTACATGCAGATCCATAGTATCCTTTGTAGTGTTGTAAATACTTTTGCTTTGAAAACTTTTTCATTGTCCTAAATCACCCTGACTCTGACCAGTCTTTCAGTTCTCCAAAAGCCCAATTTAATTGTATAGTTTTGTCATGGCTTCATATAATAAAGAGCCTATTTTAAGTTGAAAGTAGTAGTCAGAAAATTGTTAATTTCCTAAAGCTCAGGAAACTAGGGTGTCACTTTTTTTGCACTGCAGCATATACACTAACTAGCTTATTAAAATTTACAAAATGTCTTTTTGAATGTATCAAGGATATATTTAGTTTGAGTGGAATTTGTCAGCAGATATCAGTAACTTATTGCCGCTTATATTGTACAATGTTAAACTTCAATTCCTGTAACCTGGTTAGTATTAATGTCAGTGACTAAAAAACTTAGAGTTAGTTTTAGGGCACTTTTTATTTTGAGAGCATGAAGTGTGGAATGTGTCACTACGATTGTTGATAAAGCTGAGGCCACTTGCAACTTGATTTTTTAAATGAAATAGATAAAGTCTTTTTGAATAATATAGTATGCACTGCTATTTGCTTGATTATGTAATGTCAAAAGTTTAACTATATTCCAAGTACAAAAACATACTGGATTACATTGAGGATGTTGAATAGCATTCATGATGGCTTTGTTTTGGTTTGGGGCAGCTGTCACCAGCTAAAGCAATGTTGTTAAAATTAGCTCAATAAAAATGTCTTTAAAATGTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000077254:ENST00000370794:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF139001=GVQW=PD(10.3=57.1)
A:
NA
C2:
PF063377=DUSP=PD(37.3=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGCAGTCACTAAATGTGGT
R:
TCTTCCATAATGCCCACTAAGAAGA
Band lengths:
350-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains