RnoINT0161658 @ rn6
Intron Retention
Gene
ENSRNOG00000011294 | Usp33
Description
ubiquitin specific peptidase 33 [Source:RGD Symbol;Acc:1307848]
Coordinates
chr2:257601139-257602810:+
Coord C1 exon
chr2:257601139-257601207
Coord A exon
chr2:257601208-257601716
Coord C2 exon
chr2:257601717-257602810
Length
509 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTGCATACACACAATTTTAGGAG
3' ss Score
5.14
Exon sequences
Seq C1 exon
ATCCTCCAGGTCCAATAGACAACACTAAAATTGCAGTCACTAAGTGTGGTAATGTGATGCTCAAGCAAG
Seq A exon
GTAAGTTTAATAAACATACATACATAATTTCTTTGTTTTCTGAGACAAGGTATCATGTCCTCTAGGCTGTCCTTGAATGTAGCTGAGAATGGCTTTAACTTGTGATCCTCTCTGTTTCTACCTCCCAAGTGCTGGTATTATAGGAGTGTAGCATCATGCTTTAATATTGAAACTTACTTGTTAATGAGTTCTCATTGATAAAAAAGAATAACCAGCCATTGTGTAATTTATTTACCTTGTTCAGAAATGGTCAGACTTACAGTAAAACAAAGGGTAGAAATTTCTTATTTATAGGAAGATTTTAGGGCTGTTGGTAGAAGCTTGGACAGTGGATCTCTAGAAATTTGGAAACAGACTCCATTATTGTTTCTTATAGGCACACAAGCTGATAATTGAAGGTTTCAGAAGTTCTCAGTCATCCCTAGCGTATTTACTCTATTAGGTATACTGTGAAAGCTATGTAAAGATTTGTGTTTGTAAACATTCTTTTTGCATACACACAATTTTAG
Seq C2 exon
GAGCAGATTCTGGTCAAATTTCAGAAGAAACATGGAATTTCCTGCAATCTATATATGGTGGGGGACCTGAAGTTATCCTCCGACCTCCAGTTGTTCATGTTGACCCTGATGCACTACAAGCAGAGGAAAAGATTGAAGTAGAAACTCGCTCTTTGTAGTTGTGAGGGCAGAGCTCTAATGGAGTCATCCTCACTTGATGCGCACACATTCAAAACATTCCTCAAAGCATGTTGACTCTCTTGATTTCCATCTTTTTCCTCATTTATTCCTTTGTACTGGGCATTATGGAAGGGTATGTTAAATATGTTATATAAGTTGGTATATTTAATGTTAAGTAACTTACCGGATTATCTTTCAGTGTACTATTTTGAAAGGAAAGGGACAGTTGGTAATTAGGTTCTACAGGCAGATTCAGCATACCCTTTGTAGCAGTGTAAATACTTTGGCTTTGAAACATTTTTATTACTCTAATCCGTCATAAGTGGCTAAGCTTTCATTTCTTCAAAAAACAAGTTAAATTGTCTACTTTTGACATGGTTTTGCATAGTAAGGAGCCTATTTTAAATCTAAAGTAGTGGTCAGAACACTGTTAATTTCCTAAAGCTCAGGAAACATTAGGATGTTACTTCTTTTGCACTGCAGCGTATAAAATTGCATATTAAAATTTACAAAATGTCTTTTTTGAATGTAACAGGATGTATTCAGTTTCAGTGGAATTTGTTACCAGATATCAGTAAATTATTGCCACTTATAATGTAAAATGTTAAACTTTAGTTATATAGACCTGAATGGTATTCATTAATGTTAGTAACAAAAAACCCCCTTAGTTTTAGGCCACTTTTATTTTGAGAGCATGAAGTATGGAATGTGTCAAATGAGACTGTTGATAAAGCTGAAACCACTTGCAACATGATTTTTTAATGAAATGCATAATGTCTTTTTGAATAAGAGTATTCACTGCTGTTTGGTGATCATGTGACATCAAAAGCTCAGTTATATCCAAGTACAAACATGCAGGTGACAAAGTATGGAACAGCATTCATGGTGACTTTGCAATGTTGTTAAAACTCATTCAATAAAAATAATTCTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011294:ENSRNOT00000066125:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.058
Domain overlap (PFAM):
C1:
PF063377=DUSP=FE(30.7=100)
A:
NA
C2:
PF063377=DUSP=PD(37.3=52.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAACACTAAAATTGCAGTCACT
R:
CCCTTCCATAATGCCCAGTACA
Band lengths:
346-855
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]