GgaINT0036818 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:6393570-6394383:+
Coord C1 exon
chr8:6393570-6393715
Coord A exon
chr8:6393716-6394259
Coord C2 exon
chr8:6394260-6394383
Length
544 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TTTTGCTCTCTTCCTTGCAGCCA
3' ss Score
12.11
Exon sequences
Seq C1 exon
ATGACTACACCAGCATCTCCAACAAGCCGTGTGACCTCCAGTGCACCACGCGGAATGGAGAGAGGCAGCTGATGGCCCGAGCCCAGGATGGTACCTCCTGCAAGGACAGGACCTACCAAGGGGTCTGCATCAATGGGAAGTGCGAG
Seq A exon
GTGAGGCTCTGGAAGGAAATAGTACAGAAACCAGGGGTATAAATGCCTCGTTGGACTGCTTAGTCATTGCGAAGCCGAGGATCCCAGCAGAGAAGTGAAACCAAGGCCTGGCAGGAGTGATTACATTTGCTTTTGAATGCCTGTGGGTTAGAGCAGAGCAGAGGGACTCACGCAAATGGAGTCAGATGTAGAACAGGGGTGAAGGATGTGTGTGTGTAGTGTTGGAGAGAGGTGTCTTCAAACCTCGAGTAGCCTGCCTGCCTTTGATGCAGCGTCTCCTGGAGGACGATGCTGTACATCGCTATTACAGTGAGAAGGACTGGCCAAAAGATGGGAGGCTGAATAAACAGAAGCAGACTTTCTGCATCTTATTTCCTGCACCTACACGTGCGACCCTGCCCCCGGCTCAGGGGCACAGTGCACGTGGCCACAAACCACCCCACACCCGCGCGCCCAGAAGCTCACCTAAAGAATAAGGTAGCCTTACCTTGAAAAGACACCGTCCCCTAAGAGACACTCTTTGTTTTTGCTCTCTTCCTTGCAG
Seq C2 exon
CCAGTGGGGTGCGATGGGAGCCTGTATTCGGCCCGGACGATGGACAGATGCAGGGTGTGTGGAGGGGACGGCAGCACTTGTCACCGTGTCTCAGGCAGCTTCCGAAAGGCAGTCTCACAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004032:ENSGALT00000006421:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF059869=ADAM_spacer1=PU(11.8=33.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACTACACCAGCATCTCCA
R:
CTATCTGTGAGACTGCCTTTCGG
Band lengths:
270-814
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]