GgaINT0038235 @ galGal3
Intron Retention
Gene
ENSGALG00000002451 | KCNT2
Description
NA
Coordinates
chr8:2792121-2793227:+
Coord C1 exon
chr8:2792121-2792350
Coord A exon
chr8:2792351-2793010
Coord C2 exon
chr8:2793011-2793227
Length
660 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CAATTTCAACACTACTTCAGGAA
3' ss Score
4.03
Exon sequences
Seq C1 exon
GTTTGGAGTCTGTCTGATTGGTGTTAGAAAGGAAGATAACAAAAACATTTTGCTGAATCCAGGTCCTCGGTATATCATGAGTTCTACAGATATATGCTTTTATATAAATATCACCAAAGAAGAGAATTCTGCTTTCAAGAAGCAAGAAAAACACAGAAAAAGACATGAATCAAAGTTGTCTTATCATGGAGCTTCTAGGTTGCCTGTACACAGTATAATAGCCAGCATGG
Seq A exon
GTAAGTTAATAGAAAAACATGTCTCACAACATGTTCAATAAACAGTACTTTTCAAGCTTTTAAAAATGCACTCCTATAATTAAGAAATTAAAATAGAGTGCAGAAAGAAAGTATATTAAACATTTCCCCTCTTCTTTTCCTAAAAAAAGGTATTTTTCCCTCGACTGTATATATGGGTACCATTACATTTTCTCTCTCATTTCAGGAAATAACATCTTGAAACTTAAGTTAAAAAAGAAACAGAAAATTAAAAATTAAAAAGTAAATTAAAAAGTATCAAGTGATTCAGGTACCAACTTCTAACATAGGTTTTAGAAATGTGAAAATATCTGATGAGTTTGTTACATGTGTGTCAAATTTATAATTATTACTAAATGATGTACATGAATGAAATATGAAATCTACTGGTGATGCATATTAATATAAGTTAATTGTACTTGGCATATATATTCATAGTTAGGGATGAATTAGGCAAAGTTACAGGAAAAGGCTTCCTCAAGAGTAAATATTTGTTATACTTTAATATGATAAACATAACTAATGAATGTAGTATTCCTTTCACTCTTTGTCCACGAGGTCTGAAAATCCCTACTAAATACGGGAATCTCATTTAAATGTTTTGACAATCACATTGTAAAACCAATTTCAACACTACTTCAG
Seq C2 exon
GAACTGTGGCTATTGATTTACAAGACACAGGATGCCGAACGTCCAGCGGACCTACGCTAGCTCTTCCTTCTGAGGGAGGTAAAGAGGGCAGACGGCCCAGTATAGCACCTGTTCTGGAGGTTGCAGACTCATCCTCACTTCAGGCATGTGACCTGCTAAGCGACCAGTCAGAAGATGAAACCACTCCATCTGATGACGAAGTCTCTGCAGGCTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=NA C2=0.517
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PD(8.5=18.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATCCAGGTCCTCGGTA
R:
GGTCGCTTAGCAGGTCACATG
Band lengths:
344-1004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]