MmuINT0085847 @ mm10
Intron Retention
Gene
ENSMUSG00000052726 | Kcnt2
Description
potassium channel, subfamily T, member 2 [Source:MGI Symbol;Acc:MGI:3036273]
Coordinates
chr1:140509384-140513034:+
Coord C1 exon
chr1:140509384-140509613
Coord A exon
chr1:140509614-140512820
Coord C2 exon
chr1:140512821-140513034
Length
3207 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
CTCATGTTTTATTGTGTTAGGTA
3' ss Score
7.82
Exon sequences
Seq C1 exon
GTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGCATCATTGCCAGCATGG
Seq A exon
GTCAGTACAAACTCATTGGAATTACCTTTAGTGTGTTTTTCTAAGATTATAAATGCACATCTATTTTCCTAAAAAGTCATAGTCAACTTCAAAACTTATTTGTGAATATTATAAACTATGTATGATTAGGTAATACTGAACAAAATTTCTAAATCATTTATTAAAAATAGATTACCAAAATGTACTCAGTAAATATGATTCTGATTATAAGCGCTTGCCTTGTATATTTTTCTTGTTGGTTATCTGTTCAATGATGAATTGGTACTATTTCCAGTGGGCTTTGAAATTTTTTTCAAAACTCACTCATTTCTCTGTATGCCCATCATGGACTTTACATTTATGACACTAACATACAGAGCAAGATAATATAATATAATGAAATTATTAAAAAATTTCCCATTAAACTACCTACAAACCTATAAGTGTATATGATTTCTTGTCACAAGGAATGCATGCCATTCTCTTTATGGAATTTCATTGGCTTTACTTACTCAGTGAGATCCCTCTTTTCACCTGTTTTGGATTTCTTACTTGAACTATATTTAACCTTACTACCCTTAGCTTCATTTCCCAGCCACCCCCAATCAGAGGCTGCTATTTATACACTGTTCCATACATAACCAGCATATGCTATTGACCTTCATGATTTCACACCTCCGTAAGTTCCTCAAAACGGTTGGCTTTTGATGTGGCTTCAAATATCGTGCCCTTCATGGCTATCTTTACCTCAGCCTGTAGTCATGTAACTGAACACAGTGTTCAGTGGTTCCAATCCATGCTGTGGTTAAAAATGGTTACAGAAAGTCGCAATAGTGCCATTCATGGATTAAAGATGCAGAATAAATGCAATGAGCATTGCTAGTACTTGTAACAACATCTAAGTGAAAGTAAATAGCCGAGGGGCTGTGAGATAGATAAGTGGACACACAGATTATTCAAACATGAGGACTTGAGTTTGTTCTCAAGAATCTACATGACAAGGCTGAACATGACAGCATACGCATTTAATCCCAGTGCTGAAGTGCCAGAGACAATCTGCATAGATGTTGTCTAGACAGCTCACCAATGCTGTTAACCCTCAGCAACTCACAGAGCCTGTCCCGAAAAGCAAGAGAGATGACTCCTGAGGAACATGCATTTTATATCTGGACTTTACACTTATTTCTGGACTCCACATATATTTTTATACTTGTTAGGTGTCCCCCACATACACTGTATACCTGTACACACACAAAAAATATACAGACATCTTCACACACTTGTACACACATACACAACAAAGAAAAAGAGAATAGAAAAGTCCAGAAAAAGGAGACAGACACACCTTTGTGATCTCATGGAAGTCAGAGATTCAGTTGTAGGAAACATATTGATCTTTATCTTGAAAACCCCAGTGAGGCAATAATAGTGTTAGGTAAACTTTGTGACTGTCATCCCAAACTCATACAGTGAAACCAAACCCCTTCCAGTGTCATAGTATATACCTTTATTTGGGAATTTTATTTTTATAAAGAAATTAAAATGGGCCATTATGGCTAGCAGTGAACTGTCAGGAAGAAGAAATACAACATAGACTCATATTCTGGAAACTTATGAAAAAAGGGAATTGAAGGGATGGCAGTCATTAAACTAGAAATGAAAACAGATCTATTTCTCACCACTTTCTGAAAAAATGACAACAATGTAAAGACTTCATTCTGAAATTTTATCCTTCCTGATTGTGAGAAATTGGTCTCTGCTGTTATGGCATCTAATGTGCTCCACATTGTTATGGAGGCTTTATCAAACTATTACAATTATTATGAGATTCACACACAAAAAATAGAATAGTGCTGATGAACAATTGAACTAATAAAGTACAGTAGATCCTATATTCTGAAGACCTGTTATCCAAAAATAAGTACTTCAACAGAAGATTAGAAAAAATGGTCAGTGAAAAAAAAAAAACAACCAACCAACCAAACAACAACAACAACAAAACCCTCTAAGCAGAGGTTACTTATTTATGGCAGAGAGAACAATCTCAGAAAGGACCAAGCATTTGTAAGAGGAAAATATATTGAAAGGAAAGTCTTGTTCCGGTAGCTTTAACTGTTTCTTCAGATCTTTCTGCTAGATTATAAATTCCTCATACCTATGTGAGATCCTGGCATATATCAGTATTGGCAGTCTGACTGACAACAGAGCAAATGGAGCCTCCATACAGGCATGGTTCTCTCTGTGTGGTCTGTGTTAGAAAAGAAAACAACTATGTGTTTGGAAGTAATGTTCAGTCAGATACATTGACAAGAAGATTATATAATCATTCTTTGAAAGTGAGAAAGGGTTTAACACTCAATGTTGGGACAACTTTACATGAAGAGACACATTTGTAAGATGAAAATAATCTCATTTTGCTTTTGATAAGACTTGAAAAGAATCTTAACATGCCCTATTTTCTTTTTGTTCTGAAGTACTAGGGTACTGCATGATCATCTATAGGGTTAATGTGTTAGATGTACACTCAGATCTACAACTTTAAGATTATAGCATCTGTGATAAATTTCTTTTGCATCAATAAATCAATTTTATAAAATTTAACTCTATCTATTTGCTTAAGATTTTCTTTCGTTAGTTCTAGAAAACCTTCTTCTTTTCTCAGTGAGACAGAGTTGTCATATAATGTGATATCTAGTAATCATCATCATCTTTATTCATATATTGGAATGACTGATCCCTGGTCCTCATATAAGGAATTTCCTGGAGACCAAACCTTTTAAAAACCTCACTGCCTCTTACATATTCACAATCGAATCCAAGCTCTCATCACAAGAAACTGCATCTATAACAAATAATTGTTGATGCAGGGTCTCCTTGGGTAGCTTTGCCTGGCTTGAAACCTACCTGGTAGATCAGACTCCCCTTGAACTCACACAGATCAACCTGCATCTGCCTTCTGAATGCTAGAATTAAATGTATGTGGCACTGTGGCTGACTGAGCCTGACTAATCTCACATATAAATTTGATATACATTTATCCAGTGAAATGCTTATGGAAAAAATAACCAAATTACCTTGAGAGCTTGAGAGAGATTACACACACACACACACACACACACACATGCATAAATGCATGCTTGATAATGAGATTAGTTTTCACCATCAAATGGTCATTATGTCACAGGTAGTAAAAATGTGCTAATAGATTCTCATGTTTTATTGTGTTAG
Seq C2 exon
GTACTGTGGCTATAGACTTGCAAGACACAAGCTGCAGAGCAACAAGTGGCCCCACCCTGGCTCTTCCTTCAGAGGGAGGCAAAGAATTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTGGCAGATACATCATCAATTCAAACATGCGATCTCCTAAGTGACCAGTCCGAAGATGAAACTACACCAGATGAAGAAACATCTTCAAATTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052726:ENSMUST00000120796:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.422
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PD(14.5=10.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types