RnoINT0078077 @ rn6
Intron Retention
Gene
ENSRNOG00000013312 | Kcnt2
Description
potassium sodium-activated channel subfamily T member 2 [Source:RGD Symbol;Acc:735074]
Coordinates
chr13:57404998-57409409:+
Coord C1 exon
chr13:57404998-57405227
Coord A exon
chr13:57405228-57409195
Coord C2 exon
chr13:57409196-57409409
Length
3968 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGT
5' ss Score
4.68
3' ss Seq
TTCCTGTTTTACTGTGTTAGGTA
3' ss Score
8.78
Exon sequences
Seq C1 exon
GTTTGGTGTCTGCTTGGTTGGTGTTAGGAGGGAGGATAATAAAAACATTTTGCTGAATCCAGGTCCTCGATACATTATGAATGCTTCAGACATATGTTTTTATATTAATATTACCAAAGAAGAAAATTCAGCATTTAAGAATCAAGACCAACAGAGAAAAAGTAATGTGTCAAGGTCATTTTATCATGGGCCTTCCAGATTGCCTGTCCACAGTATCATTGCCAGCATGG
Seq A exon
GTCAGTACAAACTCTGCAATTAACTTTAGTGTGTTTTGTAAGATTATAAATGCACATCTATTTTCCTAAAAAATCATTGTCAACTTTAAAACTTATTTGTATATATCATACCCTATTATGCTTAGATAATACAGAACAAAATTTCTAAACCATTGATTAAAATGAAGCAATATTACCAAAATGTATTCATTAATTTTGTTTCTGATCATAACTGTTTGCCTTGTATATTTTTCGTGTTGATTATCTGTGCAATTACCAAATGAGACTACTCACAATAGTTGTTTTTTATTTATTTTCAAAAATCTCTCATTTTATCATGTCCCCATCACTGACTTTACACTTATGACAGCCACATACACAATATAATACCATGGAAACAGTTAAGATGAAATGCATTAAAAATTTCCCATTAAACTACCTACACACCTAAAGTTTAAATGATTTCTTGTCATAAGGAATGCACGCCATTCCCTTTATGTAATTTCATTGTCTTTACTTACTCCATGAGCTCACTTTCTTCACCCAGTTTGGATATTTTACCTGACCTATATTCAGCCTTATTATCCTTAACTTTATTTCCCACCACCCCCAATCGGAGGCTGTTATTTCTACACCCTGCCATGCACACCCAACATGATACACACACATACGCTATTGACCTTCATGATTTCGCACCTCTATAAGTTCCTCAAAGTGGTTGGATTTTGATGTGGTTTCAAATACCATGCCCTTCATGTCTATCTTAACTCAGTCTGCAGTCTCACGTATCTGAATTCAATGTTCAGAAGTTTCAAACCGTGCTGTGGTTGAGAATGGTTGCAGAAAGTCACAAAAGAGTGTTATTTATGAATTAAATATGCAAAATAAGTGCAATCAGCATTTCTATTACTTGTAACAATATCTAAGTAAAAGTAAAGAACTGAGGGATCTTGATATGTGGATAAACAGCTTGTGCAAACATGAGGACTTGAGTTTGTTCTCAAGAATCTACATAAAAATGCTGAGCATGCTAGAACACACTAATAATCCCAGCACTGAAGAATCAGAGACAATCTGCATAGATATTGTCCAGACAGCTCACCAATGCTGTTGACCCTCAGCAACTCAGAGACCCTGTCCCCAAAAGCAAGAGAGATGACTCCTGAGAAACAATGCATTTGGTATCTGAACTCCATATATATTTGTATACGTGTTGTGTGCTCCCACATACAGTGTATACCTGTACACACAAAAGTATACAGACACATTCACACACTTGTGAACACATAGACAAAACATAAAAAGAAAGAATAGAAAAGTCCAGAATAACGTGACAGACACACCTTAGTGACCACAAGGAAGTAAGAGATTAAGTTGTAGGAAACATATCGATCTATATCTTGAATACCACAATGAGACACTAATAGTGTTAGGTGAAATTTGTGACTGTCATGCCAAGTTCATACAGTGAAACCAAAGCCCTGCCCAGTGCCACAGTATATTTGGGAATTTTATTTATTTTTTTTTATTAACTTGAGTATTTCTTATATACATTTCGAGTGTTATTCCCTTTCCCGGTATCCGGGCAAACATCCCCCTCCCCCCTCCCCTTCCTTATGGGTGTTCCCCTCCCATCCCTCCCCCCATTGCCACCCTCCCCCCACCAGTCTAGTTCACTGGGGGTTCAGTCTTAGCAGGACCCAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGATATGCATTGCTACCTATGAGGGCAGAGTCCAGGGTCAGTCCATGTATAGTCTTTGGGTAGGGGCTTAGTCCCTGGAAGCTCTGGTTGCTTGGCATTGTTGTACATATGGAGTCTCAAGCCCCTTCAAGACTCTTCCAGTTCTTTCTCTGATTCCTTCAACGGGGGTCCTATTCTCAGTTCAGTGGTTTGCTGCTGGCATTCGCCTCTGTATTTGCTGTATTCTGGCTGTGTCTCTTAGGAGCATCTACATCCGGCTCCTGTCGGTCTGCACTTCTTTGCTTCCTCTATCTTGTCTAATTGGGTGGCTATATATGTATGGGCCACATGTGGGGCAGGCTCTGAATGGTTGTTCATTCAGGTTAGCATTATTTATTTCTATGTGACTAATGAACTGGCAGGAAGAAGAAATACAACATAGACTCAGGGACAGGAAACTGATGTGAAAAGATAATTGAGAGGATGTCAATCATCAAAACGGGAATGATAACCAATCTATTCCTCACCATGCTCTGAAAAATATCACAACAATGTGAAGACTTTTATTCTGCAACTTTATCTTTCATAATTGTGAGAAATTAGTCTCTTAGGACATCTAATGTGCTACACATTGTTATGGAAGACTTAGCAAACTATTACAAATACCATGAGATTCATAAAAAAATAGAATAACACTGATGAACAATTGAACTAGTAAAATACAGTTGATTCTATATTCTAAAGACGTGTGATCTAAGAAATGAATTTTCACAGAAGTTAAAAGGGAAAAAAAAGTCAATGTCAAAATATAGAATTTACCTGGGGCTGGAGAGATGGCTCAGTGGTTAAGACCACTGCCTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGTTCACAACCATCTGTCATGGGATTCGATGCTCTCTTCTGGTGTGTCTGCAGACAGCTTTTAAAATATATATATATATATATATATATATATATACATATATATATATGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGCATATATGTATATATAATGTATATGTATATATATATGTATAATTTTAAAAAAATTTGCCCACTTCTAAAGCACAGGTTACCTATTTATGGCGGAAGGAATGTAGGAAAGACCTCAGAAAAGACCAAGCATTTGTAAGAGAAAAAGAGTTTCAAGGAAAGGCTTGTTCCTGCAGCTCTAACTGCAGATCTAACTGAGGTCTTTCTGCTAGATTATAAATTTCTCCTACCTATACCAGATACTGGCAGATGCTAGTATTGGCACTATACCTGACAACAGACCAAATGGAGCACCCATATAGGCATGGTTCTGTCTGTGCGCAGCCTGTGTTAGGAAAGAACAACTATGTATTGGGGAGTAATGTTCAGTCAGATATATTGACAAAGAGATTATATAAGTATCTTTTTGAAAATGAGAAAGAGTTTAACATACAATGTTGGGACAGATTTACATGAGGAGACATATTTGGAAAATAAAAATAATCTCATTTTGCTTTTGATAATATTTGAAAAGAATCCTAATGTGCCCTATTTTCTTTTTGTTCTGAAGTACTAGGGTACTGAATGGTCATCTATAGACTTACTGTAGTAGATGTGCTCTCCACTCTACAACTTTAAGATAACACCATCCTAGATCAGTTTCTTTTGCATCAATAAATCCATTCTATAAAATTTACATCCCTTATCTATTTATTTAAAATTTTCTTTCATTACTTCTAGAAAACCTTCCTCTTTTCTCAATGAGACAGTTGTCCTAGAATCTGATATCTAGTAATTACCATCATCTTTGTTCATACCCTGGAATGACTGAGTACTGGTCCTCACGTAAGGACTTTCCAGGAGACCAAACCTTTTGAAGACCTCACTGCCTCTTACATATCCACAATTGGATCCAAGAACTCATCACAAGAAACTACATCTGTAACAAATATTTTTTGATGCAGGGTCTCATTGGGTAGCTTTGAGTGGCTTGAAACCCACCTGGTAGATCAGATTGCCCTTGAACTCATGCAGATCTGCCTGCCTCTGCCTCCTGAGTGCATGCACACACGCACCCATGCACATACATACATACGTACATACATACCTACATACATACATACATACACACATACATACATGCACACATACACACAAATGCATGTTCCATAATGAGATTAATTATACCCATTAAATAATCATTATGTTACAGGTAGTAAAAAAGTGCTAATGGATTTTCCTGTTTTACTGTGTTAG
Seq C2 exon
GTACTGTGGCTATAGACTTACAAGACACAAGCTGTAGAGCAGCAAGTGGCCCTACACTGGCTCTTCCTTCAGAGGGAGGCAAGGAACTAAGAAGACCTAGCATTGCTCCTGTTTTAGAGGTAGCAGATACATCATCAATTCAAACCTGCGATCTTCTAAGTGACCAGTCAGAAGATGAAACTACACCAGATGAAGAAACATCTTCAAATTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013312:ENSRNOT00000017884:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.403
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PD(8.0=11.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]