DreINT0013220 @ danRer10
Intron Retention
Gene
ENSDARG00000104868 | KCNT1 (2 of 2)
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr5:64871174-64877016:+
Coord C1 exon
chr5:64871174-64871409
Coord A exon
chr5:64871410-64876802
Coord C2 exon
chr5:64876803-64877016
Length
5393 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
GAACACTGTTGTTTTTTCAGGAA
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTATGGTGTGTGTCTAATCGGCACAAAGAGAGAAGACAACAAGAGCATTCTCCTGAACCCCGGCCCTCGCCACATCATGTCCGCCACAGACACCTGCTACTACATCAACATCACCAAAGAGGAGAACTCGGCCTTCATCTTCAAGCAGGAGGAGAAGCACAGTAAAGGCTTATCAGCCGCCGGCGTGTACGACGCTCCGTCTCGCCTCCCAGTGCAAAGCATCATTGCCAGCATGG
Seq A exon
GTGAGAAGATCTACCCGATAAACTCAAAACCCAGAATAATGCTGATGATACACAGGGCAACATTCATTCATTCATTCATTCATTTTCTTGTCAGCTTAGTCTTTTTATTAATCCGGGGATGCCACAGCGGAATGAACCGCCAACTTATCCAGCACGTTTTCATGCAGCGGATGGTCTTCCAGCCACAACCCATTTCTGGGAAAACAGAGCAACATTTTGAGCAATAAATGGGCAACCAGTTGAGACTCGAAGTTACTAATTAAGGCATTCGTCTTAGAGCAAGAAGGTCGCTGATTCGAGTCCCAGCTGGGCCAGTTGGCATTTCTGTGTGGATATTGCATGTTCTCCCTATTTGGTGTGGGTTTCCTCCGACAGTCCAAACACATGCAATATAAGTAAATTGGATGAACTAAATTGGCCGTAGTGTGTGAATGAGTGTTTATAGGTGTTTACCAGTGCTGGGTTGCAGCTAGAAAGGTATCAGCTGCGTAAAACTTAAGCCAGAATAGTTGGCAGTTCATTCCTCTGTGGCGACCCCAGATAAATAACGGACTAAGAAAACACACACACGCAGTGAAATTGTGCACAGTTTCTTCGTTTTTAAGTAGTCGGCGCCTGGAGTGTTGTAAATACCCGCGCTCGCCTCACTCGCAACAAACCGCATATGAGATAATTGACATCAGTACATAATAACCGGTTATGATTATTACTGAACCTATACCGAATTGTCTGCGTCTGACCGAAGAAACGATTAATTTTGACACCCCTATGTATAAATGTCGATTTCACAAAATTGATCCTTGACTGGTTTTGTGGTTCATGGTCACATATAAGCCCCTTTCACACAGCAACACTGGTATTTTTCTGATAAAGCCTGTATGTGTGAAAGACGCTATTTAGTGTACTCCAAAACAAAGAAAGCATTAGCATTTACAACAAGGGTGTCCAAACTACGGCCCGCGGGCCATCTGCGGCCCGCAATCAGTTTTGTGGCGGCCCGCTAGGCTTTTTATGAATATTAATAGAATCTGGCCCGCCATACAAAAATGAACGTGAATCCATAAATAACCACCAGGTGTCGCTATGACATGCCTTCCATTAGGCAGCAGGTCCTGTTATGAAGTAAAACGAACCGAACAAACTGAAGGAAACAATTGATAATCACGTTTTGGCAAGCCGTGGCACAAGCAAGAAAAAGCAAAATCAACAGTGAGTGCAGGAAATTTCAGTCACGATGGGGCAAAGAATATTTCTTCACAGAGGTCAGTGGAATATGTGTCTGTTTAATTTGCCAGGAATCAGTTGCAGTAATGAAGGAATATTATATTAAAAGACATTATAAAATAAAACATCAGGCCTTCAGCTCTTACACTGGTGCCGAACGAGATCAAAAAGTAAAACATTTAGCAGCTGCTCTATCAGCTCAACAATAGTATTTTTTTCGTGCTAATAAAGTGCAAGAAAATTCTACGCTGGCTAGTTATCAGTAGGGCCAGACGGAATCTGCAGACGTTTTTTTTTTTTTTTTGCTATTTATGTGGAGAATTTTGGTAAAAATCTGCAGATTTCTGTGGAATTATTTTGGGAGTATCATAACTAAAACCTTCGAATATGAAATAAACAATAACATCTTTTTAACTTTTATTTAATGTTTGAAATCCAATTAGATTCACTTTATTTGGTAAATAAAGCAAGTTTGTCATATAATATATCTAGTAAAAGACAGAAAATATGACTGTACACACTGCATTGTACATAAATCAGATGAACATTTTCACATTAGTCAATAATAGTACTGAAATTGATAAAAAAAAGTGAATAAATTTAGATTTACACACATTTACTCAAGTAAATAAACAGAATTAATGATGGGCAAAAAATCTGCAGAATTCTGCATGCGCACATTCCGTGTGAGCCTAGTTATGAGGTAGCTCAGCTAATCGCACAGCACAAGAAAAAAAAAGATTAAAGATTTCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCGTGTGTTTGTGTGATGTATGTAAAATTTGGCCCGGGACAACGTTTTTTTTTTTTTTTTTTGTATCTGGCCCTCGGCCCAAAAAGTTTGGACACCCCTGATTTACAAGATGTAAGCATTCAAAACCTAAAATATGTCTTCATGTTTTAGTTAAAATTACACCTCACATCAAATAAATCTGTGCGAGGCACTTCAGGGGACCTTTCAACATTAGTGTTGTCGTTCTAACATAACACAACAAAAAAATGACACAATTTTAATTTGTTCACTTCATTGCCACTGCAGGCTTGATTCAATGCCATTTCCATATGGTTGCCATATGCCAGTTAGTAACATTCAGAAGCAGGGTAAGTTGATCAAAATACAGAAGGCTTTGCTAGTCGTGCTCATGATAAAATATATCCTTTCTTTCGTTGTTTTTCCTTTTGTCGAAGTTGATCAGTCTACTTCATATGGTAAGTCTGAGCATGCGGTTTCCTTAGCTTTAGAGACACAGTTCAATGTCATAAGACATCATTAGCGGATGTCTGTGTAAATGTTAGCATTTACAGAAACCTTTACAGTACCTCCTGCTCATTCCTGCTACTTGAACCCTCAGATGAAGTCTTTTGTCCTGTTTTATATAGCAAATGAGATTAGTGTTTTTTTTTTTAATTGAGCTTGAAAAATGCACTTGCATGTGTAAAATATACCTGGTATGGCAAGCCATTTAAACATTTAATCTCTAAACAATTCTTATATTTTTTATACTACTAGCACTATTTTTTAAGATACTTTGTTTTGCATTAAGTACAAGTGTTTATTCATTAGGTGCTATTTTTTAAATACTGCGTATTCTTTAGTTTATAATATCTTTTTTAATGATGCTAGTATGTACACTGTAAAAAATGCTGTAAAATTTGCAGTATTACTGGCAATTTTGTTTGCCAATAATACTGCAGAATTTACAAGTGCGCTGTAAATTAACAATTTCAACTGTGTTTTTTTAACAATTTACACTAACTGGTCACTTTATTAGGTACACCTTTCTATTACTTGGTTGGACCCCATTTTGCCTTCTTAACTGCCTTAATCCTTCGTGGCGTAGATTCAACAAGGTACTGGAAATAGAAATTTTGGTCCATATTGACATGATAGCTTCATGCAGTTGCTGCAGATTTGTCGGCTGCAAATCCATGATTTAAATCTCCCGTTCCACGACATCCCAAAGGGGCTCTAGTGGATTGAGACTGGTTACTGTGGAGGCCATTTGAGTACAGAGAACTCACTGACTACGTTTACATGGACACCAATAATTCGATTGTAATGTGATTAAGACAATACTCTGATTAAGATTCTACCATGTAAACAGTGATTTTTGATTAACTTAATCTGATTAAGGTCACAATCGAACTAAAGAGGAAAGACGTTTGGAGTATGCTGCATTTTAGTCGCATTATTGAAGTGCATAACATACATGTAAACACCTTAATCGAATTATTACCGTCATGTAGGACTGTTCGCAGCGTTTTGCCCAGGGGTGGCCAACCCTGTTCCTGCAGAGCCCCCTTCCTGGAGATTACAGTTGCAGCCCATATCAAACACACCTGCCTATAATTATCACGTGATGTTCAGGTTCTAATTAATTGGTTCAGGTGTGTTTGATATGGGTAGCAACTGAAATCTGCAGGAAGGTGGCTCTCCAGGAACAGGAGACTAATTATTCTCTTAATTAGATTAAAGCAAATAATTTGATTACTGATGTCCATGTAAACATAGTCATTGTCAAGTAGTAACAATCAGAAGATGGGTTGTGCGTTAAGTGATGCTCCTCTGCAGACCTCGGTTGTAACGAGTGGTTATTTGAGTTACTGTTGCCTTATTTTCAGCTGGAACCAGTCTCCTTTCTCCTCTGGCCATTCTCCTCTGACCTCTGGCATCAACTAGGCATTTGTGCCCACAGAACTGCCGCTCACTAGATATTTTAGCTTTTTCTGACCATTCTCTGTAAACCCTAGAGATGGTTGTGCGTGAAAACCCCAGTAGATCAGCAGTTTCTGAAATCCTCAGACCAGCTCGTCTGGCCACGTTCAAAGTCACTTAAATCTCCTTTCTGCCCCATTCTGATGCTCGGTTTGAACTGCAGCAGATCGTCTTGACCATGTCTACATGCCTACGAAAATGCCATGTGATTTGCTGATTGGAAAGTTGCGTTAACGAGCAGTTGGACAGGTGTACCTAATAAAGTGACCAGTGACCAGTTACAATGCACTTGTAAATTTTACAGTATTACTGGAAACTCACACTGTATAATGAATAAAGTACTTAATGGGAAATATGATAGTGAAATTAAGTGCTAGTAACATGAAAATAATGTTTCATAAATAAAATTTTAAATGACGGTGGCACAGTGAGTAGTGCTGTCGCTTTACAGCTAGAATGTCGCTGGTTCGAGTCTCAACTGGGTCAGTTGGCATTTCTGTGTGGAGACGTGGTATAGGTGAATTGGGTAACAAAATTTGTCCGTAGTGTATTTGTGTGAATGAGTGTCTATGGGTCTTTCCCAGTACTGGGTTGCAGCTGGAAGGGCATCCGCTGCGTAAAACATATGTTGAATAAGTTGGCTGTTAATTCCGCTGTGGCAACTCCAGATTAATAAAGGGACTAAGCTTAAAAGAAAAAAAAATTATGAATTTTAAATGACTTGCCATGTCGCTGGTCTACTCTCTAGGACAATGAACGATATATTTATCTATATACTGTTTAAGGATTAAATCCATCATGTTTCCTCACGTTTTCCCTCATAACTGCCTTTAACACTTCCCAAAGGAACAATTTTCTGCATAGTCACAAACGTTCCCTTCAAAACATTTCTTCACTTCAGCGTTTTTCAATTAAACCTCACAGCGCTTAAAGATTTTGGTTGCAAAGGACTGATTTGAAATGTGCAAATCAGCGTTCATTCATTTATATATATATATATAAAAGCAGTGAATCAGGGTTGAGGTCAACTTCAGTGACTAAAAAAATTTTATAATTAAACATTCATAGCATTAACTCGACCAATTTTCCTGATAATCCACACACATTTACTTATGTTTTTCATTTTTAAATAATTCCACTAAATAAAATGAACTGGAATTGACCTAAATTCTGAGACATGTCAGTAAAAAATTATTAATTCAGTATTTTATTTATTTTTTGCCTGTTGTCATTGCACTGAAATAGCACAAAAGCAACTGGCATTTCAAATCAAATACACATTAACACACATTAAGTCTATGTATCTCCTCATGCTGAACTTTCCTAAACGCTCACCTAAAGAAGAACACTGTTGTTTTTTCAG
Seq C2 exon
GAACTGTGGCCATTGACCTGCAGAACCCGGATCCACCGGCTGACAGCAATAAACTGGCTCTGCCCACGGAGAACGGAGCGGGCAGCCGCAGACCCAGCATTGCCCCTGTGCTGGAGATCGCAGACTCCTCTGCCATCCTGCCCTGTGATCTCCTCAACGACCCCTCAGAAGACGAGACCAACCAATCAGATGAGGATGGAGCGCCGGCCATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104868:ENSDART00000161567:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.597
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PD(8.5=11.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]