GgaINT0123768 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8915486-8916759:-
Coord C1 exon
chr17:8916521-8916759
Coord A exon
chr17:8915703-8916520
Coord C2 exon
chr17:8915486-8915702
Length
818 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTCCCCCCACCGCGTCCAGGTA
3' ss Score
8.34
Exon sequences
Seq C1 exon
ATACGGCGTCTGCCTGATCGGCATCCGCAGGGAGGAGAACAAGAGCATCCTGCTGAACCCCGGCCCGCGGCACATCATGGCTGCGTCCGACACCTGCTTCTACATCAACATCACCAAGGAGGAGAACTCTGCCTTCATCTTCAAGCAGGCAGAGAAGCAGAAGAAGAAGGGCTTTGCAGGCAGGGGCACCTATGACGGCCCTTCCCGCCTGCCCGTGCACAGCATCATCGCCAGCATGG
Seq A exon
GTGAGTCCGGGGGTTCCTGCACAAATCGCACCCACATCCCTGCTCCTCGCATCCTGGCTGCTCTCAGCAAGCCCAGACACCATCATTAGAGCTTGTGATGTCCGTTATCATTAACAGTATTTGTCTGCAGCAATCCCTCAAGCCTTGTCTGGAAGGATAAATGCTGTTGGCCGCATCTTAAATCATGTTTATGATTCCCAACCTGATGAGCGGTGTGATTTGCTCTGCAGCGAGCGGTGCATTTTCTCAAATGAAAAATGCCATGAGTCATTACTTCCAGCTTGCATCTGGGGAGACCAAGTTCTGGGGTTGTCTGGAGAGGCTGTGCTGTGATGGCAGATTGTATTTTAGGCAAATAATTTATGCATATATACTCATGAGCAGCAATTTGCATGATTATCCCACAGCAAGCCACAGAGCACTTTGCTGAGTAGAACTCATCAATGTTCTTGTCATGTGGCTTGCTCACAGTGGGACCTTTTGCAAAAAGTGGAACAAGAAGTGAAATGGTGTGAGCAGGTTCAGCAGGTGCAGCTCCATGGCTGCAGGAATGCGCCCAGCTCCCATGCTTTGCTCACTGTGGAACTCATGGCTTTCATAGCCATGCAGAAACAATGGATGAAGATTCAGATGAGAGCTTCAGCTTGGGTTTCCAACTGAGAGCAAAGACTTGATGGCCTTGGTCAACACTCTGTAAATATGTTTGGATTTTAGAAGGTGCTGGTCGTGAATGGGGTCCCAGCGGGGCTCAGTGGTGCCATGCTCTGCCAGCCCTTCCCCTCCTTATAGAGCGCTGTGCTTCCCCCCACCGCGTCCAG
Seq C2 exon
GTACAGTGGCCATGGACCTGCAGAACACTGAGTGCCGCCCCACCAACAGCAGCAAGCTGGCGCTGCCAGCAGAGAACGGCTCAGGCAACCGCCGGCCCAGCATCGCGCCTGTGCTCGAGCTGGCTGACACCTCATCCCTGCTGCCCTGCGACCTGCTCAGCGACCAGTCAGAGGATGAGATGACACAGTCAGACGAGGAGGGCTCAGCAGTGGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PD(8.5=11.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCGACACCTGCTTCTACA
R:
CCTCCTCGTCTGACTGTGTCA
Band lengths:
357-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]