GgaINT0123768 @ galGal4
Intron Retention
Gene
ENSGALG00000001645 | Segment
Description
Potassium channel subfamily T member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8QFV0]
Coordinates
chr17:8220158-8221431:-
Coord C1 exon
chr17:8221193-8221431
Coord A exon
chr17:8220375-8221192
Coord C2 exon
chr17:8220158-8220374
Length
818 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CTTCCCCCCACCGCGTCCAGGTA
3' ss Score
8.34
Exon sequences
Seq C1 exon
ATACGGCGTCTGCCTGATCGGCATCCGCAGGGAGGAGAACAAGAGCATCCTGCTGAACCCCGGCCCGCGGCACATCATGGCTGCGTCCGACACCTGCTTCTACATCAACATCACCAAGGAGGAGAACTCTGCCTTCATCTTCAAGCAGGCAGAGAAGCAGAAGAAGAAGGGCTTTGCAGGCAGGGGCACCTATGACGGCCCTTCCCGCCTGCCCGTGCACAGCATCATCGCCAGCATGG
Seq A exon
GTGAGTCCGGGGGTTCCTGCACAAATCGCACCCACATCCCTGCTCCTCGCATCCTGGCTGCTCTCAGCAAGCCCAGACACCATCATTAGAGCTTGTGATGTCCGTTATCATTAACAGTATTTGTCTGCAGCAATCCCTCAAGCCTTGTCTGGAAGGATAAATGCTGTTGGCCGCATCTTAAATCATGTTTATGATTCCCAACCTGATGAGCGGTGTGATTTGCTCTGCAGCGAGCGGTGCATTTTCTCAAATGAAAAATGCCATGAGTCATTACTTCCAGCTTGCATCTGGGGAGACCAAGTTCTGGGGTTGTCTGGAGAGGCTGTGCTGTGATGGCAGATTGTATTTTAGGCAAATAATTTATGCATATATACTCATGAGCAGCAATTTGCATGATTATCCCACAGCAAGCCACAGAGCACTTTGCTGAGTAGAACTCATCAATGTTCTTGTCATGTGGCTTGCTCACAGTGGGACCTTTTGCAAAAAGTGGAACAAGAAGTGAAATGGTGTGAGCAGGTTCAGCAGGTGCAGCTCCATGGCTGCAGGAATGCGCCCAGCTCCCATGCTTTGCTCACTGTGGAACTCATGGCTTTCATAGCCATGCAGAAACAATGGATGAAGATTCAGATGAGAGCTTCAGCTTGGGTTTCCAACTGAGAGCAAAGACTTGATGGCCTTGGTCAACACTCTGTAAATATGTTTGGATTTTAGAAGGTGCTGGTCGTGAATGGGGTCCCAGCGGGGCTCAGTGGTGCCATGCTCTGCCAGCCCTTCCCCTCCTTATAGAGCGCTGTGCTTCCCCCCACCGCGTCCAG
Seq C2 exon
GTACAGTGGCCATGGACCTGCAGAACACTGAGTGCCGCCCCACCAACAGCAGCAAGCTGGCGCTGCCAGCAGAGAACGGCTCAGGCAACCGCCGGCCCAGCATCGCGCCTGTGCTCGAGCTGGCTGACACCTCATCCCTGCTGCCCTGCGACCTGCTCAGCGACCAGTCAGAGGATGAGATGACACAGTCAGACGAGGAGGGCTCAGCAGTGGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PD(8.5=11.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCGACACCTGCTTCTACA
R:
CCTCCTCGTCTGACTGTGTCA
Band lengths:
357-1175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]