GgaINT0038235 @ galGal4
Intron Retention
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2764317-2765423:+
Coord C1 exon
chr8:2764317-2764546
Coord A exon
chr8:2764547-2765206
Coord C2 exon
chr8:2765207-2765423
Length
660 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
CAATTTCAACACTACTTCAGGAA
3' ss Score
4.03
Exon sequences
Seq C1 exon
GTTTGGAGTCTGTCTGATTGGTGTTAGAAAGGAAGATAACAAAAACATTTTGCTGAATCCAGGTCCTCGGTATATCATGAGTTCTACAGATATATGCTTTTATATAAATATCACCAAAGAAGAGAATTCTGCTTTCAAGAAGCAAGAAAAACACAGAAAAAGACATGAATCAAAGTTGTCTTATCATGGAGCTTCTAGGTTGCCTGTACACAGTATAATAGCCAGCATGG
Seq A exon
GTAAGTTAATAGAAAAACATGTCTCACAACATGTTCAATAAACAGTACTTTTCAAGCTTTTAAAAATGCACTCCTATAATTAAGAAATTAAAATAGAGTGCAGAAAGAAAGTATATTAAACATTTCCCCTCTTCTTTTCCTAAAAAAAGGTATTTTTCCCTCGACTGTATATATGGGTACCATTACATTTTCTCTCTCATTTCAGGAAATAACATCTTGAAACTTAAGTTAAAAAAGAAACAGAAAATTAAAAATTAAAAAGTAAATTAAAAAGTATCAAGTGATTCAGGTACCAACTTCTAACATAGGTTTTAGAAATGTGAAAATATCTGATGAGTTTGTTACATGTGTGTCAAATTTATAATTATTACTAAATGATGTACATGAATGAAATATGAAATCTACTGGTGATGCATATTAATATAAGTTAATTGTACTTGGCATATATATTCATAGTTAGGGATGAATTAGGCAAAGTTACAGGAAAAGGCTTCCTCAAGAGTAAATATTTGTTATACTTTAATATGATAAACATAACTAATGAATGTAGTATTCCTTTCACTCTTTGTCCACGAGGTCTGAAAATCCCTACTAAATACGGGAATCTCATTTAAATGTTTTGACAATCACATTGTAAAACCAATTTCAACACTACTTCAG
Seq C2 exon
GAACTGTGGCTATTGATTTACAAGACACAGGATGCCGAACGTCCAGCGGACCTACGCTAGCTCTTCCTTCTGAGGGAGGTAAAGAGGGCAGACGGCCCAGTATAGCACCTGTTCTGGAGGTTGCAGACTCATCCTCACTTCAGGCATGTGACCTGCTAAGCGACCAGTCAGAAGATGAAACCACTCCATCTGATGACGAAGTCTCTGCAGGCTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.493
Domain overlap (PFAM):
C1:
PF0349313=BK_channel_a=PD(7.2=11.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAATCCAGGTCCTCGGTA
R:
GGTCGCTTAGCAGGTCACATG
Band lengths:
344-1004
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]