GgaINT0038289 @ galGal3
Intron Retention
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6333074-6334141:-
Coord C1 exon
chr8:6334001-6334141
Coord A exon
chr8:6333211-6334000
Coord C2 exon
chr8:6333074-6333210
Length
790 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTGTTTGTTATTGTACTCAGATG
3' ss Score
7.24
Exon sequences
Seq C1 exon
GTCCATGCAGAGACACTGCATCATCTGATCCAGTCACGACGGGAGGCCGTAGAAGTGCCGCAGGAGACCATGTGCAAGGCTGCAGCCAAACAGGTGGAGACTGCACTTCTCACTACAGATGCGGGTCACCAGGTCCGTGAG
Seq A exon
GTGAGTTCCTGAGTGAAATAAAAAGCTGTTTTAATTTCGCTGTTGCTTTAGATGCTGCCTCTAGGTTATGCTCTGTTCAGTAGAACTTCTTCATGTTCATAACATGCCTAATAATAGGACTTCAAAGGAGCATTTCTAGCATCACTACTTAGAAGTTGGTTGGCAGTCCTAAATCCCTGATTGTGTTTCTCATGATCTTCCTGCTAACTACCCATGCAGAATTTTGTTGTTGCAGGACAGAATGGTAATTGTGAGCATAACGTCTCTAATTTGTAAACATTATACTCCATCAGATTGAACCTGTATCTATTTCATACAAAAATCACACTGGAAAAGCAGGGAAATGTGTGAGCAAATTTAAACATGGAAGTTTGTACGATGTTGGAATTTAAACCTGTTGCTTTCATTGCAGTGATGATGTGTTTTCTAATGGAAATTAAATGTTTTCTTTCATGTTTTTAAAAACTAATTGTAATAATAGGTCCAAAATGCTCTGTTGCATGGAGATCATACTAGTGATCAGAGGTTAAGTTGACTAGAATGCAATATAGGTGATGTAATGCATGTCTATAACTTCACATTAATAATTCCACTCCCCATAAGTTAAATAATATATATATATATACAGAGCATCTCTTAAAATCAGAATTGAAATGTGTGTAATTACAAACATCTCAAAACAGTCTTGTGCATTCATTCAATATAAATTGCTTGCAAGAAGGACAGTCTTCTCAAAAACACGTTGATAGTTAGAAGCTCATTGTGTTCCTTTGTTTGTTATTGTACTCAG
Seq C2 exon
ATGACAGAGCTGGCACGAACCCAGATCTCAGATACTGTCAGTGCTCCAGCTGCTCCAGTCACCACTTTGTTTGACCACCAGCGACAGCATCACTCGGAGTTCATGAAACAACTGAGAGCCCGAACTGATACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955:ENSGALT00000006306:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGACACTGCATCATCTGATCC
R:
TGTTTGTATCAGTTCGGGCTCT
Band lengths:
270-1060
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]