HsaINT0033794 @ hg38
Intron Retention
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180041662-180043192:+
Coord C1 exon
chr1:180041662-180041802
Coord A exon
chr1:180041803-180043055
Coord C2 exon
chr1:180043056-180043192
Length
1253 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTGTGTGTGTTCATGTTTAGATG
3' ss Score
8.71
Exon sequences
Seq C1 exon
GTCCATGCAGAATCATTACAGCAGGTGGTTCAATCACAACGGGAAGTAACTGAAGTCCTGCAGGAAGCAACGTGTAAAATAGCAGCTCAGCAGTCAGAAACTGCTCGCCTCACCACAGACGCAGCACGTCAAATCTGTGAG
Seq A exon
GTAGGTGCCACTGAGAACACTTCTCTTTTTACTTCTTTTTAGTCAATCTGAGTAACTTTGATCTTCAGTAATGGGTTTCTAATATCTTAGTAAATGCATACTTTGAATTAGTGACTTTTAGTGGGGGCCATACCCTATTGAAATAAGAGGCACCATTGATTGGAGTGTGTTGTACATGTGATTGAATGTTATAGAGGCAGAAAAAAGATGAAGAGCTCTAAATTTCTGCCCTCTGGTAAGCTTTTTAGAAAAATATCAACTTTATTGATGTATAATTTATAAACAATAAAATGTACCTATTTTAAGTATGCAATTTGGTGAGTTTTCTCTCACACACACACACACACACACACACACACACACACATCTCCCTATAACCATCACCACAATCCAGAAATAGCATATTTCCTCATGTCTCTTTGCAACCAGTCCCTAATCTCAGTCCTGGGGAACCACTGATCTGCTTTGGGTGAAGATGTTTCATTTTTACCCAGAATGATATTAGTTACTGTCTTTTCTTCTATAACGTGGGTATAGCCCAAAGTAGTTTTATTGCTGTCTCTACATAGGATATCACAATTCATAATTGATACAGTTTCACTTTATTTTAGCAGTTATAATTTTTTTAAACCAAAAGTTAGTACTATTTGTAAAATGACTTAGTTATTGGAAATCCATGAATGTACTATATGTTGGGTACTGTGGAGTTGTACATTTTAGTATAAAACTGAGTCTCCTTTCTCAAGAAAATTAAAATGTAGACAACATCAACAAAGATTTCAAAACACTTTAAGTCATTAGTAAAAGGAATAGCTCAAAGTAGTGCTTGAACAAATACTGAATGGATGGTACATGCAGCACTTGCAGTAGTGGTTAAGAATAGGGAAAATGTACTTGACCTGTTGGTCAGCAAAGAGTTAGAAAAGAAGTAGTAATTAAATTGATTCTTGAAGGAAGATTTAATTTTTGGCTTATTACTGCTTATGTTATGCTTTAAGGTTTTCTGTCTAATTCATAGATTGTTATAGCTGGGTGAAACCGTAGAAATCATGTAGTCTAACTCTGTTTTTATAAGATGAAGCTGTTGAGACTTAAAGAGGCTAAATGACTTGTCCACAGTATTTCATCTATTAGTGGCAGAATTTGCTTGTTCTCAAGTCAGTGATCTTTCTTTCCAAGACACTATGCTCCTTCTCAGTTCTCTGACCTTACGTTTTAATACATTTGCCTTTCTTGTGTGTGTTCATGTTTAG
Seq C2 exon
ATGGCAGAGTTGACTAGAACTCATATCTCAGATGCTGTCGTGGCTTCAGGAGCTCCCCTTGCAATACTGTATGACCACCAACGGCAGCACCTTCCAGACTTTGTGAAACAGCTGAGGACCAGAACTGAAACAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837:ENST00000367607:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF094945=Slx4=PU(76.7=70.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGCAGAATCATTACAGCA
R:
CTATCTGTTTCAGTTCTGGTCCTCA
Band lengths:
278-1531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development