MmuINT0034831 @ mm9
Intron Retention
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:157757748-157758406:-
Coord C1 exon
chr1:157758266-157758406
Coord A exon
chr1:157757885-157758265
Coord C2 exon
chr1:157757748-157757884
Length
381 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
TTTGGTGTGTTCACATTTAGATG
3' ss Score
7.45
Exon sequences
Seq C1 exon
GTCCATGCAGAATCTTTACAGCAGGTGGTTAAATCACAAAGAGAAGTGACTGAAGTCCTCCAGGAAGCAACTTGTAAAATAGCAGCTCAGCAATCAGAGACCGCGCGCCTCACCACAGATGCAGCGCGGCAGATCTGTGAG
Seq A exon
GTGAGAGCCACTGGAGCCTTTGTTCTCAGCCATCCTGGATAACTAAGAACTCGTCTGGAATGGGTGCCTAACACTGACAAGATGCATACTTTGACTTAGTGATTCTGAGTAAAGCCCCACTAAGGTCACATTATTTACTTGTTATGGGGAAGGGCTCGTGGGTTTGATGTTGCAGTCAGGGGACAGCTTGGAGGAGATGCCTCTCTCCTGCTACCCTGGGGGTCTCAGAGATCAAACTCAGGCCTGCAAGCTTGGCAGCCTTTGTCTGAGGAGCCGTCTGCGAGCCCAGTTCAGTGATCTTCCCAGGGCATCACGTTCCTTTTCAGCTCTCCTGACTCCTTTGTAAAGTCTACTTTTACTGTTTGGTGTGTTCACATTTAG
Seq C2 exon
ATGGCAGAACTAACTCGAACACACCTCGCAGATGCCATCACAACTTCTGGAGTTCCCCTAGCAACACTGTACGACCACCAGCGGCAGCATTTTCCAGACTTCATGAGAAAACTGAGGACCAAAGCTGAAACAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671-Cep350:NM_001039184:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=NA C2=0.804
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATGCAGAATCTTTACAGCA
R:
CTATCTGTTTCAGCTTTGGTCCTCA
Band lengths:
278-659
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: