GgaINT0038426 @ galGal3
Intron Retention
Gene
ENSGALG00000003164 | F1NQQ1_CHICK
Description
NA
Coordinates
chr8:4759762-4761602:-
Coord C1 exon
chr8:4761436-4761602
Coord A exon
chr8:4759849-4761435
Coord C2 exon
chr8:4759762-4759848
Length
1587 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTATTATTTTTGCTTTTCAGTTG
3' ss Score
10
Exon sequences
Seq C1 exon
TATCTTACATATTCTTTCATGTCCACAGAACAGGTTTATTTACTCCAGATATGGCGTTTGAAGCTATTGTTAAAAAGCAGATAGTGAAGCTGAAAGGACCTTGCTTAAAAAGTGTGGATCTGGTGATGCAGGAGTTAATCAACACTGTCAAGAAGTGCACTAAAAAG
Seq A exon
GTAACTTACAAATAGATCTGGTAAGGTAAGTAGAACGTAATCATTATGGTAGTTAACACAAAGTCTTTTTTGCATTTTAGGGTATTATAAAAGATTACTGAGCTTGTTATTTTATCTGTAGAGTAAGACTCTAAATAGTTACAACTTCTGCGTAACTCCGAACAAAGTAATGATGAAAATAGCCAAGTCCTTGAGCAGGTCTGGGGTGTGAGTACTGATGTACTGAAATTGCTGAGAAACGTCCTGTCTTGTTCTTTACATCTCTCTGAATAACACAATTTTTTTGGTACCAGTAAGGAGATGGATGAACTATTTCTTAAAACAAGGAAGGTTGATCATCTTTTGCTGAAGGTCATAGGGAAGCGTGGGAAGGATTCACCATATTTTGAGCTGAATTTGGAGGGTATCCTTTGAATTAATTGCGCAGATTCTTTCCCATTGTTGTTGGCTGTGATTACTATTGCATTTTACTGATCAAGTTTTAAAGTACCATTATTGAGATGTAAAGATATAAAACGTTGCCACAAGGTGGAGCCTTTAAAGAACAAGAAACTTGGAAAATACTGAGAATGCTGCTCTGGAATCACGCACAGAAGAAGAGTAAAGCATGGAGATGCCACTTCAAGGCTGATAAACTGGTTTGTCAGTTGGTAGTATGAGCCCTACCCTGCTCACTTTTTCATGAGTACTTTTCATTACAGTACTTACAGCATATCATATCTTTTAGAGTGTGCTCAATGTTTAAGTGTCATATACAAGCTTTTGTTTTGCTTTTTTTCTTCTTTTAGCTTGTTTTTTTGGACCATTCAAACGTACATCTTATTGGTAATACTGCAGCTACTCTAAGTTAGAGTTAGCTAAGTGGGATAAGTGAACAACTTAGAGGCAAATGTATCAACCAGTTTAAAAACTTGTTAATATTTTGTTGCCTATTTTGTCATAATAGACAAGGAAATAAGATAGTTCATCATGGAAGCTCATTTCTGAAAGTTTTGTGATTTCTGAGTAGTCAGATAGAAGTACAGTTTCTTCTTGGAATGGTTTATGACTTGTGTTTTAGCTGCTGAAGCTTTGTTGCAGTATTCTTGTATATATCCATTCAGAATCTGTATATTGAGGAAAACAACCTTTACCCATTGCCTTCCCATTCTTTTCTGTGGAGCTTTGTGTCAGATGTAGGATGTATTCAAAGGATATGCAATTAGTTAAGAGTGGAATGCTACATTTGTAAGACCGTCAGCTCTCTCTAACCTATTATCCCAGATCTGCCTTTGGAGCTTTCCCATACCTCTGAGTGAGATTGGTTGGATTGTTGGAAGTGTTTAGATTTCAGTGATACAGTTACTTTTATTTGAAACAATTGTCTTTTCCTCATTGTTCTACAGAACGAAAACACAGAAAAAAAGTCCAAGGGTTTAAGTCCCTACAGTTTCTCTGGAAGATCACTATTAATAGCAAGTGAGGCTTGCATTTGCCAAACCATTTATCATACTTGCTTTCCTCCAAAAAAGAAAGTTGAAGTTTCTCTGTTTATATGTTATTGAAGCTACCCTGCAGATATGAATTTCTATTATTTTTGCTTTTCAG
Seq C2 exon
TTGGCAACCTATCCAAGATTATGTGAGGAAACAGAAAGAATTGTTGCTGGTTACATTCGTGAAAGAGAAGAGAAGACCAAGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164:ENSGALT00000005010:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(38.7=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(19.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTCTTTCATGTCCACAGAACAGG
R:
CTGATCCTTGGTCTTCTCTTCTCT
Band lengths:
246-1833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]