GgaINT0038838 @ galGal4
Intron Retention
Gene
ENSGALG00000004323 | RASAL2
Description
RAS protein activator like 2 [Source:HGNC Symbol;Acc:HGNC:9874]
Coordinates
chr8:6436946-6440801:-
Coord C1 exon
chr8:6440319-6440801
Coord A exon
chr8:6437081-6440318
Coord C2 exon
chr8:6436946-6437080
Length
3238 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TACAGGTCTCTCTGCTGCAGGTC
3' ss Score
8.85
Exon sequences
Seq C1 exon
AACCCGGTGTACCACCTCAACAACCCACCTGCGCCGTTGCCCAAGGCCTCCGTGGACTCCAGCCTGGAGAACCTGAGCACCGCCAGCTCCCAGAGCCGAAGCAACAGCGAAGACTTCAAGCTCAGCGGGCCCAGCAACAGCAGCATGGAGGACTTCACCAAGCGCAGCACGCAGAGCGAGGACTTCTCTAGGCGGCACACGGTCCCGGACAAGCACGTCCCCATCGCGTTGCCCCGCCAGAACAGCAGCAGCCAGGCACAGATCCGCAAAATGGACCAGGCCGGGTTAGGGGCCAGGGCCAAAGCGCCGCAGTCGCTGCCGCACAGCGCGTCCCTGCGCAGCACGGGCAGCATGTCGGCCGTGTCGGGGGCCGTGGTGACTGAGCCCGTCCAGAACGGCAGCCGCTCCCGGCAGCAGTCGTCCTCCTCCAGGGAGAGCCCTGTGCCGAAGGTGAGGGCCATTCAGAGGCAGCAAACGCAGCAG
Seq A exon
GTAAGGAAAGTCTCTGCCCGGGCGTTCTGTGCTCTGGGATTCAACCGATTACTGAGTCAAAGCTTTTTGGTGTGGCGCTGCTGCCCAGAGCTGTGGTGCCCCATACCTGGAGGTGCCCCAGGCCGTGGATGGGCCCTGGGCAGCCTGAGCTGGGGGGCAGCCAGCCCACGGGGTGATCTTTGAGGTCCCTTCCAACCTAAGCTATTCTGTGATCTAAGTTGAGCCGAATCACACCGGCTGACAGTGGCACTTAGCCTTGCTGCTGGCCACAAAATGCCAACTTGTTACCATTAGAAACCCAGCAGATGTAGCTTACCTGTTATTTCGGATGCTTTTGTACAGAAGCTTAACAGAAATGTTGTTCATTTACTCAGGCAGCAGCACGCCTGCTGGAAGAAACAGAACTTGAGCATTTCCCCACATGATACAGTAGCAGCAGCTTTGTTCTAAGCCATGGTTCAGATTGCCGGGGGAGAATGCATTTGCCCTGCGGTGCTAATTTAAAAGCACAGCTACCTAAAAACAGAGGAATAAACAAAGGCTGAATATCCCGGAATAAATTGCTGCCAAAATAATAAATAATTAGAGGTGTCTTCAGTGTGGAGAGGCCTTCACTTCACCGTGATGCGCCAACCTACCACTGGCCCCAAATAAATACTGCTTTTTCATTAATCATCCCAAACTGTGAGTAATGCAAACGCTTTCTGGAAAGGAGTGTTTATGTGTTCCAACTCCCAGTGCATTTTACCAGTTGCTGGTAGGCAGCTGTAAATCAGGATCTTCCTGTCAGAAAGCCAGCATTCCTTAACCTTAAAAAAAAATCCTGTTGTGATTTGCTGTGTATGAGAAGTATTTGCTAAATCAGTGCAATATTAAAGAGAAAAATAAGTATCTAAACGCTTGGCAATGCAGTGAGTGTAGAAAGCCTCTTAGCTGTGGGTTAGAGGGAAGATGGTTGGCCTTAGGAATGTCCTGTAGCCTATGGCTAGGCAGGGAGAGGCTCTCCAAGGCAACACCTATGCTGTTCCTTGGGTTAAGTGTATTCTTCTGCGGTCGCTGCAGGAGTAAACACGTGGGGCTTTGATTTACCTGACCCGCTTTTGAAGGACATTTTAATGTCCCACAGGACCTTCTATGAAGGATGCTGCTCTGCACATAGGCACGAGGGAGGAGTTCAGCTCCAGAAAGTCACAGCTGCAGAGGCTGCGCTGTGCTGCCCATGCAGCTACGCCCCCGCTGGAGCAGAAGCACTGCTGCAGGCGTGGTTGTGCAGGGGAAGCTTTGGGCTCTTAAGGCAAAGCTGGCATAGGAGCTTTGCTGCCAGCACAGGCTCCTGCTCTCTGGAGGCTTTGCTGCTGTCCCTGGTGCCGTAGCTGTATTGGCAAACTCCCCTGAATGGTGCAGTTTAAAGGAAGACCGTCTAACTGGTGCCTGGGAACCAAGAGCAGCCAGGGCTCCAGAACTGAGGTGCGAGGAGATCAGAAGCACTGAATCACAAAGCAGAGGCTGCTGTGCCAAGTTGCTAATAGCAGAAACGTGATGACTCGTTGTTTGAAGTGCTTGTGTTTGCGTCCTTCTTTTGAGTGTGTGTTCACATTTAGGTGACAGGTTGAGTACATTGAATACAGCTGAGCCTAGAGCAGAGGCGGTAGGAAATGTGCAGGCCAGGAATGACTTCCCTGTGCCCTAAATAAATCCATTACCTGTCCTTGTTTAGCATCAAAGCGGTGTGTCTGCAGGTATCTCTGTGCTCCGTGGCTGCATCGATACCTGCAGCTATGCCTGGCTTCAGGGCAGGCTCCTTCCCATCCCGTGTAGCAACGTGCATCTGCTTACTCTTCCACTCTCCTTCCCATGCTAATTGTTGGCACTGTGTGCACGGGAGCCCTCGCTCCTGCTTTAGAGAACTCAATTTGTTCTTTCCTTCCCCACAGCCCTGAGGAGTGCCTTGAAGTGTGCCAAAGTGAGCGGCCAACATTTTCTTTTAATGCAAATTCCACTGCATCCTTTTAATTGCAAATGGTGTTGTGGAATTCTGTTCGTATTTAATAAAAGAGAGAGCAAAAAGAGAAGCTGGGCATGTTCTTTCCAGGCATAGCTTTGTGGGCGTTATAATTATTAGACTCTGTTCTCCACAAGTCCCATTTGTTTCTGAATGCAGAGCGAGGCCCTTTGTTTGCTGGGAGAGGTCAGCTTTTGCCTTCCATTTCCATTTAGTAGGTAGGTGGGAACAGAAATGTCAGCGTGTTCCTCTGGGAGGGAGCAAAGAGGGGAATTGGTTCCTAGCAGGCATTTCTTTTTTTCCTCCTGTAAATCACAAAGCTGTAGCATCTCGAGTGCTCGCCATCCTCCTGCTCTTCATAAGCTCTCTGAACGTGGCTGCTGGAAGCACACAGCTCCTCATGAGACATTGGCTTCTGAATGGCCGTGCCACGGAGCAGCCCTCGCTTTGTACAACCGGAGGCGGTCTGCTTGGGCACAAAGTGAAGCCACAGATGGGGGAAAACTTGGTCTGTCGCATTTCTCAAAACCCAGAGACAGTGTTGCTCTTTCAGGGGTAGTTATGCTAATTTCTGGCCTTATAAACTTGTCTTTGTCCGTGAGAACTGCATGGAATTTCGACCAAGCTTCCCCCAGCCGGATGGAGAGTTTGGGGTTTCTTCTTGCAGCTTCCTTTCCAGGTTCCCTTGGACAGCTCTCCTGGTAAGCACTGCTGGCCCTGGGTCCCTTTCGTGGCTGTGGCTGGGTGCAATGCTGCGATAACCCCTGGAAATCTGATAGGCATCCCTGTGTTCGTGGCACACCTCTTGGCACTTCTGAGTACCACCATGCTGTCTCCCACCCAAATTCCTGCCTGCAGCTCCACAGCCCTCCACAGCCCCCGCCTGTCTGACCTGAGCCAGCTGCACACAGGGCCCATTGCTCTATTTTCTGCAAGAGGGAAACCTCACATTGAGAAGGTCCTGCTGAAAGTCTGGCAAAGGGGAGAAATGGATGTGAATAGGATCTGGAAATGAGAATTTTCCCAGAGAAGCTCGCCTAGACAAAGAGGGATACGTTTTCTCAAGTGTGTTGGTTTTAGAGAGACTTCAGGGAGGATGAAGTATCTCTGCAGGAGAGGTTTTGGGGCTGTGGAGGCTGAGAGATCCATGGGCGTTTTTCTCCTCCAAATTAACTGTGTCAGAGCTGATTTGGGTGTAATTTCTTTGAAGAATGCTTACAGGTCTCTCTGCTGCAG
Seq C2 exon
GTCCAGTCTCCTGTGGACTCAGCCACAATGTCACCAGTGGAAAGGACAGCAGCGTGGGTTCTCAATAACGGGCAGTACGAGGAGGTCGAGGAGGACACAGAGCAGAACCCAGATGAAGCCAAGCATGCTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004323:ENSGALT00000006891:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(33.3=100)
A:
NA
C2:
PF120043=DUF3498=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]