MmuINT0132037 @ mm9
Intron Retention
Gene
ENSMUSG00000070565 | Rasal2
Description
RAS protein activator like 2 [Source:MGI Symbol;Acc:MGI:2443881]
Coordinates
chr1:159079904-159087898:-
Coord C1 exon
chr1:159087037-159087898
Coord A exon
chr1:159080039-159087036
Coord C2 exon
chr1:159079904-159080038
Length
6998 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
AATAAAAATCTCTGACATAGGTT
3' ss Score
5.77
Exon sequences
Seq C1 exon
TGATTTGCATAAACTAAAGTCTCCAAGCCAGGATAACACAGACAGCTATTTCAGAGGAAAGACGTTATTGTTGGTTCAGCAAGCCTCCTCCCAGAGCATGACGTACTCTGAAAAGGATGAAAAGGAAAACAGCCTTCCTAACGGTCGGAGCATCTCCCTCATGGACCTCCAGGACACTCATGCTGCTCAGGCGGAGCATGCATCTGTCATGCTTGATGTGCCTATGCGCCTTGCAGGAAGCCAGCTTTCTATAACCCAGGTAGCTAGCATCAAACAGCTGCGGGAAACCCAGAGCACTCCCCAGAGTGCACCTCAAGTGAGAAGACCCCTGCACCCAGCCTTGAACCAGCCAGGAAGTCTCCAGCCCTTGTCATTCCAGAATCCTGTCTATCACCTCAACAACCCAGTTCCAGCAATGCCAAAGGCCTCTGCGGATTCCAGTTTGGAGAACCTAAGCACTGCCAGTTCTAGAAGCCAAAGCAATAGTGAAGACTTCAAACTCAGTGGACCCAGCAATAGCAGCATGGAAGATTTCACCAAAAGAAGCTCCCACAGTGAAGACTTCTCCAGGCGCCACACTGTACCAGACAGACACATACCTCTTGCTCTACCACGACAAAATAGTACGGGGCAGTCCCAAATCCGAAAACTGGACCATTCTGGGTTAGGTGCCCGAGCCAAAGCACCCCCATCTCTGCCACACAGTGCTTCCTTGCGTAGCACAGGGAGCATGTCAGTGGCGTCTGCAGCCCTAATGGCTGAACCTGTGCAGAACGGGAGCCGGTCCAGGCAGCAGTCCTCTTCCTCCAGAGAGAGCCCTGTTCCCAAAGTGAGAGCAATCCAGAGACAACAGACACAACAG
Seq A exon
GTAGGGTGTGCTAAAGTGTGCTGGCCACTGCTTGCACGGGCAGCTGCGTTAGCCCTTTATGTATAAACTGTCCAGAATTGAATTGGCACTTAATAGTGTTTCTGCAACCTTTAAACAGAAGAAAGAAAGGAAACGTCCTGGGGGCTTCTGGGTAGGTGAGAGCAGAAGGGAGCTAGACTTGTTACCTTTGGGAGACGGTAACAAACTCTCAGGAGGCTTTTCCTTCCATTAGGAGCGGCACCTTTACCTTGAGGTGTGCTTAGCACACAGCTGTGGCACCAAGTGAATAATCACACAGTTAAATAGGAGAGCCATACTCAAAATCAACTGGACTTAGGGAATCTGGAAATTAATCCTTAATTCTTTTCCTTAAGCTTCCAGAGTGAAGTTTTATAGTCTAAACTTACGTTTTAACGTAACTGCTCTCCACTTCATCCCCCACCTCCCTGTGGAAATGCCAAGTCCCATGTGCCTTTTCCTGGAAATGGCTAGAATAATAAACAACTCAAGAGAGGCAAGGGAAAGAAAGAGAAAATACAAAACTGCAGATGACTGATAAGTTCTTGAAATATTTGCACATCTCCTACATTACTACATACATGAACTAGTTCTGCTCGTGTCACACCAATATAACTCTTTAAAATTTTATTTATTTGCCTAAACTGTAATCATTCCTTTCTTAATGTATGACACTTTGAATCATTTATATATATTTTTTGCCCTTAGATATAAACTAATAGCTTTAGAGAGATCTCTTTCTTCCACTCCCCTATACGTGTGTGTTTCATGTAAAAGAGTTTTTTCCTAAAAAAAAAAAAAAAAAAGTTCATTTATGGAGTTTTTATGTAGTATTTTTATTATTTACTTATTTATTTTTGGAGGCAGGGTCTCACTGAGTAACCATGGCTGACCTTGAACTTACAGAAGTTAGCCTACCTCTGCCTCCCTAGTGCTGAAATTACAGCCTTGCACCACTTACCTGGCTTGAATATTTGTATTCTTTGAGAATTTACGTAAAATGTGTTTTGATAAGATCCAACCATATTCTCTCCCCTCCAGCTCCTCCCCTATTACTCAATGCCACTTTTCTATCCCAATTTAATGTAGTCACTCTCTTTTTTTAAATAAGTTAGTCCACTTAGGGCTATCTATGTGTGGGTGTACATGTGTGTGTATGCATCTAGCTCTTAAGTACAGACTACCTACTGGAGCATAAGTAGTTTTTCAGGAATGGTATCCCTAAAGCCAACTTATTTTATCTCCCTTGGGCAGTCAGGTGCCAATGGCTTCTCAGCAATTGGAGGACTTTATGATCCCTTCCCCGTCTATGTGAGGATTTTATCTGGCTTGATCTTGTACACACAGACATAGGTCTTGTGAGTCAATGGGTATAGTGATTTTGTCATGTCCAGCAAAGAAGGGAGACGGTATGTGCTATTGATTTAAAATTGAGCACTTCAGAGTCTTCATTCTCTACATACTGACCAGTTGTGGATCTCTGCATCTACTACAAAAGGATATGCTAATCTACTGATATAAAGATAAGAACTTAGGGGCATCAGTTTCATATTATGTTCATTTGGCAGAATAATATTAGGTTGTCCCCTAAGCCCTATCACCTAACCAGTGATGAGATTTTGGCCCAATTAATAGTACCAGGCATGAGTTCTGTCATGAGTTCTGCAGGCTTTAAGTTCAATCAGAAGGAGTTTGCTGTCTCTTTAGACATATCTTGCTACACCAGTTATTATTGTAGCTCACAGGGTTCACAGCTGAGAAGACCGTTGATTACTTTCCTCCTAGAGCATGCATAGAAACTTGAGCACTCCAAAAGCTAGTCAGAAGGGATGAAGCTTTCAGGTCAATACCACTTGATTGTCCTATGACTCAGGTGTGTGGTAAGTCACCTTCCAAGTTCTGGAGGGAAACTAAGAGCGATGGTGACAGCCTCTGATGTTTTGCTGGTCTGTGGGATCCTACTAATCCACATTTCAAAAGGGTAACCTGACCTGGCACTGGCCCTTTTATTTGATAGCTTATTGATTTATTTGTCTTTGAGAACTTAGGGCAGCCAGGGGGTAGTGAGGATGAGATAGAAGTAGAAAAAGTTCTCGCTGATAAGGTTCAGCCCTGAAAAGAAAAGGAAAATTAAACATCTCTTCTTGGCCAGGCAGTCCTCTTGCTATTACCCACCCAAGTGCCCTTTGCAGTATATTAAATAAACTTTTCTTTCATAAACGTGCTTTAAATTTTTCTCTTCTTCTGCCTTCCCATTTCTCTTTCCTGTATCATGGAGTTCTATCATGTAGTATTTGTGCTTATAATTCTTGTGCATTTCCCTGAGACCAATTGTTATTTGTACCATTTTTCCTATAGAAAAATATGCCTGTCACACAAGCACAAAACATAAGTATCCCGCAAGTGAGTAGAAGACTGCCTAGATTGGCAGGAGGTAGGAGATGTATATCACTGCCAAAATCAAACTTTAATTTTAAGATTTGTACATTGTTAGTGAATGAGGTAATGGCTATACTGGCATGAACTGGGCACAGCAACAGTGAGATGCCTAGCACAGATTTAAATTTTTCATCTTCATTTATACCCTGCTGATAACAACCACTGTCACAGCCTAGTGTTTTGATTGCTCAAGTTCTACAGAGAACTGAATTTTCTACAATGACTTTTTCTACCCAGTAAGTAAAGAGTTTATTGTTTTGAACTTGTTACTCTTTTTCTTATCTTTCCATTTCTTGTGTTTTTTCACCTCACATGAATCCTCTAGTTCTGTATAATCAGCACATTTTAAGGCAAATTCCTCTACATATTTTAATTGCAAATTGTGTTAGGGAATTTTTTTCTTTCTCCCAACCTAGAAGATTTCTTTGTGGAGATTGCTCTGTAGGCAGCTATAATTATCAGTGGCTTTGTCCATGCAAATTCCATTTGTGTCTTAGCACAAAGGAGAGGCCTTTGTTGGCACTGTGACTGGCTTCATTCAGTCTTCTCAAATACTGAGTAGGAAGGAAATAATATCCTAGTGAAATACTTTACTAAGAAACAATTCTTCTTTGGAAAATTCTGAATATTTTGACCCCTGTGAGCCACTATCTGGTCTCTTTTTTCTCATTTCTTCTCTTTTATTTATTTTGTTTTACATATCATGCATCTTGTACAAATAATAGACTTTATTTTAAATATATGAGTCCTTTAGACCTAGTGTGTCAGAAATTTGAATTAAGAGGCCTTTTAAATAGGCTTGTGACAAGCCCTTCGGTGTCTGCTGCAGCTCTCACATAGAGGTTTGTGGAGATCTCTTCTCACCAATCTCCTCAAGAGCTCGCAGAGTCCATGGGCCTCGCTGTTGTCAGACTGTGAAGAAACTGAGACCAACAAGTGTTGTTTGTATCTAGTAAACACCAGCAAGAAGCGGGGGAACTGGCCTCTTCCCAGCTGTCCCAGCCGAGCCCATGACTAACTGTGGTATCAGCGAAACTGTTGTGTCAGACCCTTTTGCCCTACAGCATGTCTTTCCCAAGGAAAACCTACCAGCATCAACTCAGAGGAGATTGTAGGATACTCTCCTCCTCATATCTTTTTTTCACCCTTCATTTTTGTTCACAGTCTCTTAAAAGTTAAATAAATATAAATTTCTTCCCCAGGCAGTAGCTAAGCAAGATGAAATCTGAACCACTCCATTTCTTTGACTATGAATTAGAGATAATAACTTTTGTTACATATCCAGCTTATAAAAAGGAGATGGGATGATTGTTAATGAAAAGCCTTTGATGTTCTTCCAGATAACTAAAGGAAGAACAGTGCCCTTCTCTACACAGTGTATCTTTTAATCAGTGAATTCTAAGGAGAACTCAGTGTTAATATATAAAATCTTATTGAGAGTTTCTTGTACATTGAATTAGTCACTGCTGTTCAGAAGAGTTGTAATGGTGCTGTTAGTTTGGTGATGTAATTGAGAAGGCCAGCACACGTGAGACCAAAAAAAGAAAACCTAAATAAATAAAAATAGCTCAGTGGTTAAGGGCACCTACTGCCACTCTTGCAGAGAACCCAGAGTGGACTCTCAACACCTATTTGGCAGCTCATAGCTGCCTGTAACTCCAGTTCCTGGGACGTCAACTCCCTCTTCTGGCCTTCTGAGAGCTCCTGCATACATGTGTTACACACAAACTTACAAGGGCAGACATGCATACATATTAAATAAATAAATATTTCTTTAAAAAGAAAAACTGTAAAAATCAGATTTTTCATGTAGTGTACATATTGTAATAGTTTTAACCCAAAATTACCTTTAATTTCTCCCATTCTAGTACAGTGACCCCTTGTAATTTCCTCACTATTTTTTTTCTACTTGTGGTTTTTAAAGGCTGTGACATAAACAGGAGTAAAGCTGATATGACCCATCTTGTCAATTTTATATATCTTTTTCTAACAGCTTACCCCAGAGTGAGAGTCACCCACAGAACTAGGAAGAGAGTTGAGGTGTCCAGTTCATTCCACAGTGTGCCACAGTTCAGTGCATGTTTCATTGGTCCTCTAAAAAGACAGCAGCAGCAGTAGTGCAAGGCAACCCTTGCTTTCAAATCTTCGCATTAACATTCCAAGCTGAGATCACACATGATGGTTTAATATGTTTTGCAAGCCAAGCCCGTCTTCCTTTGTATGTTCCTAGGCACACCATTAGTTTAGAACTAAGGAGCTTTATAGATAAGGAAGTTATCCCTAACAAATGACAGGGAAAAAAAGTTTATTCAAGTAGTATCTTATTAAACATTGAAAGCAGGAAGCTATTGGGTAGCTGCCTTAAGTAATACATTCTTAATAGTGAGTTATTAGTTCAAATAGTTACTGCATCTCAAACTGCCATCCTAGCCAAGCAGCTTCCGTGGACCCTAGCTGTGCTAAAGCCATATGATTGTAAAACTAAAGGGCCACTTGTCGCCTTTAAATATTGATAATCTATTCACCTTTGAGGTTCAGTGCTGCACTGTTTTGTTTTTTAGCAGAGAATTAAACCCAGTGTTTCTATTTCTCTCCGTCAGTACAGAGACAGCTGATGCACTTTGCTTTTCACATCTGGCAGGCAGGGAACTACACGTGTATTTTTTTTTGTATAAACTACTTGCAATTTATGAAGTGGTCTCACTTTCTGTCTTGTTTATTTTATAACTTGTTTTTTTTATGACAGGGTCTCTCTATGTAATCCTGGCTGACCTAGAACTCACTACGTAGGCAAGGCTGTCATCAAATTCAGAAATGCCCACCTCTGTCTCCCCAGTGCTAGGATTAGAAGCATATGACACCATGCCAAATTATCATAACTTTTTATATGAGTAGTTCTTTCCTTTTGTAGATGACAGTGCATTCTTTAGGCCAGAGTTCCCAAAGTATGATGTTTAAAATTAAGTTTACAGGGGTATTTACTTAGTCATATAAATGATACATTTGAAAACTATAACCATTAATATCTGAATAAATAACATAATTAATAGTGTCAAATTCATGGGTCTACTGACATTGCTTAGCATAAGGACTTAGCTAATTATGAAAGGTTACATTGAAATTAGATAAATGCTAATGATAAGATAGAGCAAACACTGACACAAATAAGGTATAAGAATTTTAAGTACAAAGGGTACTGAAGTTTAAGACTAAAACATGCAAATGTAAAAGGTGACTTTAGAGAGGGAATTTCTACATTCATGTGTGTGTGTCTGTGTGTGTCTACTTACATAAACTTCATCCTTCCTCAGGCATGAAGCCATTCTTACTGAGCCAAGTTCTCAGACCTTTTAAGATAGCCTGTATTAGTCCTGTGTGTATTTTAAAAGTCTTGTAATGCATCTCTGAGCTCTCTGCAGACAGGTTTTTCTCTTACCTTCTAACCTTCAGTCATCAAAATCCCCTTAAGAGTTTAACTGAGTTTTTTGTCTAGAGCAATATAAAGATTCTTAAAGTCCATAGCTAGGCATAGGGGAGAAAGTTCTCTTCAATTACGAAATTCAGAGTTGTTCCTCAAAATATAAATCCATTGTAATTATAAAAGTTAGCAAAACATACAAATTTTTCTCACTCTACTCACACACTCATTCCTCCCCATCTTCCTTCACCCTCTCACACACACATGTAACGTGCACATTTGCTTCCTTTCTCTGGCAGCCTAGAAACTAACACTCCTAAGTTACCAAAGAACTTTCACATACAGTGTCTTACAACCCTCAAAACTCCCTGTGAGATAATCAGGTAGGTAATGGGAATGGTGATGGTGGTGACAGCTTCATTCAATAGATGAGGACATAGAATATGAGATTATATACAGAGTTTTTTAAATGCTAAGTGGCAGAGTTGTTTGTCAAGACTAGATTTTTCTAACCCTCTGTATATCTGTATGGAGAAAGGACCATTTATCTTGCTATCCTCTCTAGATGGAAATGTGCTGTAGAGGCTTAGACTATTAGAGGAATTCATAGTTTGACTTTAGGTTCTTCACAAACTTTCTTATATAGTGCTGAGGACATAGTTTAGTGGTAGACATTTCCCTAGAACATATGTGGAGCTCTAGGTTCCCTACTTAACACAGCTAAGTAAAGCACAAACTCTTGAATGGTCCTAACACTCCAGGAAGCCAGTGTTCTAGAAAAGTAATAAATGTCACTTCTTCTCTTTCTCTAAACGGTTACTATAATCTAAGCTCAGTGTTGGCATTCTGATAGGTACATCTGTGAGCTTGCTCAGCAGCAGCCAGTTCTTTAATCCATGGATATATAAGAGAAAAAAGAATGGTTCTTACAAGTTACGTATGTGAATTCAGAATGGTTTGTCATTATATAAATACGTATTCTCTGGCCCTGGCACTGATAGATTATTACTGAAAATTCAGATTAAGACTGAAAGCATTTATTAAGAGTGATCACAGTTATGTAATTGTCTTTATGAAGCATAACTAGTGTTTTAGGAAATGGTAATAAAAATCTCTGACATAG
Seq C2 exon
GTTCAGTCACCTGTGGACTCCGCTACAATGTCCCCAGTAGAAAGGACAGCAGCCTGGGTTCTGAACAATGGACAGTATGAAGAGGATGTGGAAGAAACTGAACAAAATCAAGATGAAGCCAAGCATGCTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000070565-Rasal2:NM_177644:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF120043=DUF3498=FE(57.2=100)
A:
NA
C2:
PF120043=DUF3498=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: