GgaINT0038972 @ galGal3
Intron Retention
Gene
ENSGALG00000004213 | ABL2
Description
NA
Coordinates
chr8:6538843-6540406:+
Coord C1 exon
chr8:6538843-6539016
Coord A exon
chr8:6539017-6540172
Coord C2 exon
chr8:6540173-6540406
Length
1156 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TCATGCTTGTTTCTCCCTAGGTT
3' ss Score
11.87
Exon sequences
Seq C1 exon
AGGTAGCAGAGGAGCTTGGAAGAACAGCCTCCTCCTCATCCATTGTTCCTTACCTGCCTCGGTTGCCCATGCTTCCCTCCAAGACAAGAACACTGAAGAAACAGGCAGAGAACAAGGAGAACATTGAAGGAACACAGGATACCCTGGAGCATTCGGCATCCAGCTCTGCGCCAG
Seq A exon
GTATGAGCACAGGGGCACTCACACTGAGGCTGTGTGCTCTGGGATAGATCTGCTCCCAGTGTAAACGGTCTGACAAGCAGAAGAGAACAGAACATCCACCAAGTGGAGATCTTTCAACCAAGTATCCTGCCAGGATGGCTTGTAAATTTTCACATTCTAGTCAAGATACAATTAATGGTGTTGGCTTCTTTCAATCTGTAGCCTGACTGCAGGACTTACGTTACTGTGGGAGGGGAGGCAGGGATACTCTTCCTGGATATGTGAGATGGAGAGATCTGAATGGTGGCAGATTTGCTCCCTGAGGGAGCTGAGGGATGAGATGACTCATGGGGAGGAACCCTGCATGGTCTTGTTCTTCAGTGACAGAACGATACAGAGCAGGGTAGGAGCCTGGCCACAGTACACGTGTCACTTCTTATTCCTGAGAAGGCAGAGGAACTACTCTTGACAACTGAGATGATGTCTGTACAGGCACAATTCTTTTGGGTCAAGCAGACTTCTCCATTCTGCTCTCAGTTTGCAGAACGAAGAACCCAAATGTTGGGACATGAAGCAGTTCTGTGGCAAATGCATATGTGCAGCTTCAGCTTTCTTCTGCCTTACATAAGCTGGCACTCAAGTTAACTCCCATCCAGCCCAAGTATTCTAGGCTGGTGCTTCAAGCAGCTGTGTCATGAGGGCTGTTTGCCAGCCTGATCATTTCCTAGTAACTAGTAAACACTGCAGCTTTTGCAATGTCCTTTTAGTAAATCCCATTGGATTTCTTTCTTTTAAATTTGATTTAACTATATATTTAAGATAACAGCTTTCAAACTGAAGTTGGCAATGCAGCAAGAGATTTTCTTCTATACTTTGCAGTATCTGGGGAAGGAGGAAAGAACTACAGCAAGGGGGTAGGAAACAGAGAGAAAAGAGCAGCTTCACTTTCTCCTGACCTTCTCCTAAACTGCCTCCCCAGACAACAGACAGGTCATGCATGCACAGTGTTAAAAAAAATCAAAAGCAGACCAGCACAGAAATAAAAGTGCCACCTTCCTCTCTCAGTCTTTCTCTGCAGATCCCGTGTAACTAAAATGTTGGGCCCTTAAAGCCTGCTGCAGGACAGGGAGGTGGAAATGGAAATGGATTTTGCAGATTCATGCTTGTTTCTCCCTAG
Seq C2 exon
GTTTTATCAGAAGCACACAGCCAACAAGTGGGTCTCCCGCGCTGCCTCACAAGCAGAGGGACAAGTCACCCAGCACCCTGCTGGAGGATGCCAAAGAGACAACTTTCACCAGGGACAGAAAAGGTGGCTTCTTCAGCTCCTTCATGAAGAAGAGGAATGCTCCCACACCTCCCAAGCGCAGCAGCTCCTTCCGGGAGATGGAGAATCAGCCCCACAAGAAGTACGAGTTAACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213:ENSGALT00000006699:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTTACCTGCCTCGGTTG
R:
TGTGGGGCTGATTCTCCATCT
Band lengths:
346-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]