GgaINT0038972 @ galGal4
Intron Retention
Gene
ENSGALG00000004213 | ABL2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:HGNC Symbol;Acc:HGNC:77]
Coordinates
chr8:6215655-6218689:+
Coord C1 exon
chr8:6215655-6215828
Coord A exon
chr8:6215829-6216984
Coord C2 exon
chr8:6216985-6218689
Length
1156 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TCATGCTTGTTTCTCCCTAGGTT
3' ss Score
11.87
Exon sequences
Seq C1 exon
AGGTAGCAGAGGAGCTTGGAAGAACAGCCTCCTCCTCATCCATTGTTCCTTACCTGCCTCGGTTGCCCATGCTTCCCTCCAAGACAAGAACACTGAAGAAACAGGCAGAGAACAAGGAGAACATTGAAGGAACACAGGATACCCTGGAGCATTCGGCATCCAGCTCTGCGCCAG
Seq A exon
GTATGAGCACAGGGGCACTCACACTGAGGCTGTGTGCTCTGGGATAGATCTGCTCCCAGTGTAAACGGTCTGACAAGCAGAAGAGAACAGAACATCCACCAAGTGGAGATCTTTCAACCAAGTATCCTGCCAGGATGGCTTGTAAATTTTCACATTCTAGTCAAGATACAATTAATGGTGTTGGCTTCTTTCAATCTGTAGCCTGACTGCAGGACTTACGTTACTGTGGGAGGGGAGGCAGGGATACTCTTCCTGGATATGTGAGATGGAGAGATCTGAATGGTGGCAGATTTGCTCCCTGAGGGAGCTGAGGGATGAGATGACTCATGGGGAGGAACCCTGCATGGTCTTGTTCTTCAGTGACAGAACGATACAGAGCAGGGTAGGAGCCTGGCCACAGTACACGTGTCACTTCTTATTCCTGAGAAGGCAGAGGAACTACTCTTGACAACTGAGATGATGTCTGTACAGGCACAATTCTTTTGGGTCAAGCAGACTTCTCCATTCTGCTCTCAGTTTGCAGAACGAAGAACCCAAATGTTGGGACATGAAGCAGTTCTGTGGCAAATGCATATGTGCAGCTTCAGCTTTCTTCTGCCTTACATAAGCTGGCACTCAAGTTAACTCCCATCCAGCCCAAGTATTCTAGGCTGGTGCTTCAAGCAGCTGTGTCATGAGGGCTGTTTGCCAGCCTGATCATTTCCTAGTAACTAGTAAACACTGCAGCTTTTGCAATGTCCTTTTAGTAAATCCCATTGGATTTCTTTCTTTTAAATTTGATTTAACTATATATTTAAGATAACAGCTTTCAAACTGAAGTTGGCAATGCAGCAAGAGATTTTCTTCTATACTTTGCAGTATCTGGGGAAGGAGGAAAGAACTACAGCAAGGGGGTAGGAAACAGAGAGAAAAGAGCAGCTTCACTTTCTCCTGACCTTCTCCTAAACTGCCTCCCCAGACAACAGACAGGTCATGCATGCACAGTGTTAAAAAAAATCAAAAGCAGACCAGCACAGAAATAAAAGTGCCACCTTCCTCTCTCAGTCTTTCTCTGCAGATCCCGTGTAACTAAAATGTTGGGCCCTTAAAGCCTGCTGCAGGACAGGGAGGTGGAAATGGAAATGGATTTTGCAGATTCATGCTTGTTTCTCCCTAG
Seq C2 exon
GTTTTATCAGAAGCACACAGCCAACAAGTGGGTCTCCCGCGCTGCCTCACAAGCAGAGGGACAAGTCACCCAGCACCCTGCTGGAGGATGCCAAAGAGACAACTTTCACCAGGGACAGAAAAGGTGGCTTCTTCAGCTCCTTCATGAAGAAGAGGAATGCTCCCACACCTCCCAAGCGCAGCAGCTCCTTCCGGGAGATGGAGAATCAGCCCCACAAGAAGTACGAGTTAACGGGTAACTTTTCATCTGTTGCTTCCTTGCAGCACGTGGATGGGTTCGCCTTTGCTCCCACACAGCAGGACACAAACCTGGCACCACCCAAGTGCTACGGTGGGGGCTTTGTGCAGAGGACCTTCTACAGTGATGATGGCACTGGTACCGGCAGCGGTGGGGGTGTGAGCACTGGCGGTGGGTGGTCTGGCATCACAGGTTTCTTTACACCACGCTTGATTAAAAAGACGCTGGGTCTGCGACCAGGAAAGCCCACTGGCAATGAGGAAGCGTCAAAGCCTTTTCCAAGGTCGAACTCTACGTCTTCCATGTCCTCAGGGCTTCCAGAGCAGGATAGGATGGCAATGACCCTTCCCAGAAATTCCCAGAGGTCAAAAATCCAGCTGGAACGGACAGTGTCCACCTCCTCTCAGCCTGATGAGAGCACAGGGAGGGCAAATGACCTGCTGCCCAAAAGGTTTGAAGAAGGTTCTGCTCTGACTAGAGAAAGACCAAAAGCAAAACTCTTGCCAAGGGGTGCCACGGCTCTCCCTTTCCGAACCCCCTCCAGTTCAGAGGAAAAGGAGATTCCAGGGCTAGCAGCAACTCCTAAAAGCAAAGAAAAAAACAGTGGCCCACGGCAGGGGGCCCTCGAGGATAGCGAGAGACCGGGGTGGTCCTCTCCAGTGAAGGCTGCAGCAATACTTCCAACCACTCATAACCACAAAGTGCCAGTCCTAATCTCACCCACTCTAAAACACACTCCAGCAGATGTGCAGCTCATTGGCACAGACTCTCAGGGTAATAAGTTTAAGCTCTTATCTGAGCATCAGGTCACTTCTTCCGGCGACAGGGACCGGCCCAGACGGGTAAAACCAAAGTGTGCTCCACCTCCACCACCAGTGATGAGGCTCCTACAGCAGCCAGCTGCCTGCTCAGATGCAGCAGAAGAGGTAAGCAATGCAGTGGGAGTGCAGCATGGGCTGGAGTCCAGCGAAGGGAGTAAGAAGGCAGCAGCAGCACCTGTCGGTGGGAAATCTGGGAGGCCCGCGATGCCTCCACCTCAAGTGCCTCTGTCGTCGTCCTCCGCCTCCCCAGTGAAATGGCCAATGGCACAGCTGGCGCAAAGGTAGCATTAAGAAAGACCAAACAGGCAACTGAGAAAATCCCAGCAGACAAAATCAGCAAGGAAGCATTGCTGGAGTGCGCCGATCTTCTCTCGAGTGCCATCGCTGAGCCAACACCGAACAGCCAACTGGTGGACACGGGGCATCAGCTGTTGGATTACTGCTCAGGCTACGTGGACTGCATTCCGCATACACGCAACAAATTTGCCTTCCGGGAAGCCGTGAGCAAACTGGAACTCAGCCTGCAGGAACTGCAGGTGTCCTCAACAGCTGCTAGCATCCCTGGGGCAAACCCCATCCTTAATAACTTATTGTCGTGCGTCCAAGAAATCAGCGATGTGGTGCAAAGGTAGCTACTGTCAATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004213:ENSGALT00000006699:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.686 A=NA C2=0.902
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTTACCTGCCTCGGTTG
R:
TGTGGGGCTGATTCTCCATCT
Band lengths:
346-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]