MmuINT1003547 @ mm10
Intron Retention
Gene
ENSMUSG00000026596 | Abl2
Description
v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) [Source:MGI Symbol;Acc:MGI:87860]
Coordinates
chr1:156640439-156641229:+
Coord C1 exon
chr1:156640439-156640612
Coord A exon
chr1:156640613-156640992
Coord C2 exon
chr1:156640993-156641229
Length
380 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TTTGATTGGCCATTTCTCAGCAG
3' ss Score
1.33
Exon sequences
Seq C1 exon
AGGTAGCTGAGGAGCTTGGGAGAACGGCCTCCTCCTCCTCTGTGGTTCCATACCTGCCTCGGTTACCGCTGCTTCCTTCCAAGACGAGGACCCTGAGGAAGCAGGGGGAGAACAAAGAGAACCTAGATGGGGGCCTTGATGCCGCCGAGAGCCTGGCCTCCAGCTCAGCACCAG
Seq A exon
GTAGGAGGGGTCAGCAGAAAAGGAACCCCCCAAAGAACCAGGGCCTTGGGCCTGCACTGCCAGTGTGGGCATGCTTATCCAGCCCCATACAATCTGTTACCAGTTCTGTATTTTTGGTCCCTGGCTCCCAGGTAGTTGCCCAGATGGGTGATGACATACACATATTCTAGAGAAGGGACGAATACAGAACAAGCCAGCAGGTGTCACCACTAATACACACATCACAGTTGGAACACTCGTCACTGAATCAATGGTTTATTTGTCAATTTCCTGAGTAGTGCCAACATGTGACATTTAATAAATGCAGACAGAGCTTTCTAATGTAGTCACACTAACTGCTCACCTCTTGTCTCTCCTGTTTTTGATTGGCCATTTCTCAG
Seq C2 exon
CAGGGTTCATTAGAAGCACACAGGCCTCCAGTGGGTCCCCAGCTCTGCCTCGAAAGCAAAGAGATAAGTCGCCCAGCAGCCTCTTAGAAGATGCCAAAGAGACATGCTTTACCAGGGATAGGAAGGGGGGCTTCTTCAGCTCCTTCATGAAAAAGAGGAACGCCCCCACGCCCCCGAAGCGCAGCAGCTCCTTTCGAGAAATGGAGAATCAGCCCCACAAGAAATATGAACTCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026596:ENSMUST00000166172:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.559 A=NA C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF089195=F_actin_bind=WD(100=18.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTCCTCTGTGGTTCCAT
R:
TTTCTCGAAAGGAGCTGCTGC
Band lengths:
345-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types