RnoINT0011363 @ rn6
Intron Retention
Gene
ENSRNOG00000004305 | Abl2
Description
ABL proto-oncogene 2, non-receptor tyrosine kinase [Source:RGD Symbol;Acc:1590898]
Coordinates
chr13:74239946-74240892:+
Coord C1 exon
chr13:74239946-74240119
Coord A exon
chr13:74240120-74240517
Coord C2 exon
chr13:74240518-74240892
Length
398 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AATTGGCCATTTCTCAGCAGGGT
3' ss Score
4.58
Exon sequences
Seq C1 exon
AGGTAGCTGAGGAGCTTGGGAGAACTGCCTCCTCCTCATCTGTAGTTCCATACCTGCCTCGACTGCCACTACTTCCTTCCAAGACAAGGACCCTGAAGAAGCAGGGGGAGAACAAAGAGAACCTAGATGGGGGCCTTGATGCCTCCGAGATCCTGGCCTCCAGCTCAGCACCAG
Seq A exon
GTAGGAGGGGGCAGAGCAGAAAGGGTAACCCTTGAAGAACAAAGGACCACAATGCTACTTGGCCTTGGGTCTGCATTGCCAGTGTGGGCAGTTTTATCCAGTCCTATGCAGTCTGCTACCAGATCTGTTTGTTTAGTTCCTGGCTCCTAGGTAGCTACCCAGATGGGTGATGGTGTACACCTATCTTCTATAGAAGGGACAAATACAGAAGAGACCAGCAGGTACTACTGAGGCACTAATGTACAAATCACGGCTGGAACACTAGTCACTGAGTCAGTGACTTATTTGTGAACTTCCTGAGTAGTGCCAACATCTGACATTCAAGAAATGCAGACGGAACTTTCTAAGGTAGTCACACTAACTGGCTTTTCTGTTACTAATTGGCCATTTCTCAGCAG
Seq C2 exon
GGTTCATTAGAAGCACCCAGGCCTCCAGTGGGTCCCCAGCTCTGCCTCGAAAGCAAAGAGATAAGTCACCCAGCAGCCTCTTAGAAGATGCCAAAGAGACATGCTTCACCAGGGACAGGAAGGGAGGCTTCTTCAGCTCCTTCATGAAAAAAAGAAATGCCCCCATGCCCCCTAAGCGCAGCAGCTCTTTTCGAGAAATGGAGAATCAGCCCCACAAGAAATATGAACTCACGGGTAACTTCTCACCTGTTGCTTCTCTGCAGCATGCTGATGGGTTCTCTTTCACTCCCGGCCAGCAAGAGTCGAATCTGGTGCCAGCCAAGTGCTATGGGGGGAGCTTTGCACAGAGGAACCTCTGTGGTGATGATGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004305:ENSRNOT00000059524:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCATACCTGCCTCGACT
R:
TCTTGTGGGGCTGATTCTCCA
Band lengths:
350-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]