GgaINT0039165 @ galGal3
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
NA
Coordinates
chr8:19603072-19606261:+
Coord C1 exon
chr8:19603072-19603151
Coord A exon
chr8:19603152-19606132
Coord C2 exon
chr8:19606133-19606261
Length
2981 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
GCTTATATTTTATTTCACAGGAA
3' ss Score
9.58
Exon sequences
Seq C1 exon
TGGTCCTCCAGCTCCGTATGCTCCACAAGGGTGGGGAAATGCTTATCCACACTGGCAGCCACCAAATCCACCAGATCCAG
Seq A exon
GTAAGGAATGGAGCACAGTGTACTGTAGCGTGGTAAACTTCGAGCGCGTTTGTTTTGTCCTTACAAGTATATGCATTCTTAATACATGTGTTTCACTGGTAACTCTGAAAGGCTTTTCTTTACAGATGGTCAATTTATGTATGTTCTATACTCCCCCCTCTCCCTGTTTCTTGAGATGTTCAAATTTGGTTGTTAGAGCTGGAATGTGCTTCTTCATTAAATGTTATTGATCTTGCATCCCAGTTTATGATACTTCTTGTGAGGTGCTTGGTTATCTGATCTTGTGCAAATCCATTCTTTTTTTCTTGTAATGGAATATGATTAGCTTTTATGTTGTTACATAAAGTTCTTTGAGAATGTGTTTTCTTTTTCAGTGCTCAATGAGTTCTCATTTTATTTTGAACAGCCTCCCTGATCCTGACTTTGAACAGTATGCTGTATTGTGTATTTCTAGCTTTTGTTGACCTATATGAGGTTGCTCTTCAGAGTCTGGTACAAATATATTTTGTTCAGTCCTTTTTGAGGAATGAAACTTCTGTTGTGCTGTTCTTGATACAATAAAAGTACACAGGATTATGTATTTTGAGGCTTTGTTATAATAGTTCCGTATTTTCTTTGAAATGCATCTTTGTAGGATCTGTTTTTTCTGTGTCTGTTTATCTTTGTCAAAATCAGGAGTTTTTTCTTAATTACAACTTCTGAAGTTTTAGTCTCCTGCTTTTAAGTTGCATCCTTTGGTTGGACTAAAGCAAGTCGGGAATCTCAACTGCACTCGCAGAAGGCATGGTAAGGCTAGATGCTTGAGTCACTTATACCTCATTTGTTTGAGGCAGGTGTTCTTCAGAACTTCAACTGAATGATTTCAGTTTTCTTTTTTGTTAAAATTGCATACATCATTTTCTGATAGCCACTGATCCTGGAATGAGTGGGAAAAGATAGGACTTCGGAAGATGTTACGATCTAGAGTTCTGTTCGTATCGAAGTCTTTTATATAGCTGCTCTTGGCAAAGAACCATCTGTAGGTTCAGTTCCTAAACTCATATGGTAACTTTGCATGTGTTCTGTTCTGTATTAAAAAATGCCTGTTGCCAGTACTTGAAAGTAGAATGATTCCGGGTGACTTGACCTGAAGTCTCAGCCTACCAATTGTCATTTAATCCAAAACCATTGCCAAAAAGTTAGTCTTTTTCATTACCACCTTTTCATGATTTTATGAAGAAAAATGGCAAATACTTGTCTTGATAATTTTATTGCTGTTTTTCAGGTAAATACTTGTCTTATAAATCTAATGAAGTTTTCGTTGGTGCAGTTGAAGTTGGTGTTTCTTTTGACTAGCTTTTGCTTGAACAATTTCTATACAGGTGTCCACAGTCACTCATTTCAACACAACATATGGCTGTTTTTTTTGGTGTGGTTTTTTTCCCCCAGATTCTTCCTCCATGCCATGCTTGTATTGTTGCATGGTAGTGGAGCTACTTACTACAGTCACGTTCTTTGGAAATTCAGTGAACTGCACATTGTGATCTTTTGTTCTGGAGCAATAGCTATAAAAGGCAAGGGGTGGGGGGTGGAACCAAGCAATTGCTTATTTGCTATTTCCAGGTAACCTTAGAATCCTACATATTAGCTCTGTGTTAAATGAGGCTGTGTGGTATTGGCTGCATCTGTCATGAGTATACTGTTCTTTGTTTATCCAAGCAAGCTGTTCAGTAGACGTGGTTCCTTCTGCTTTTACGTTTAGTAACGTGTTAAGCTGAGTATGCAATTCTTCTCTTATGTGGAAGCATTTCTGCAGTGAGCACATGATAGGTTATCCTTTGACAGTATCCTCAGAAAAGTTAAGCACAGTCCCACAATGTAGTAATATTGCTTAAATCCACAGTTGTCAAAGCTAGCAGTGTAATTTAAAAGGGGAACAGCCAACTGTTAACTTTGCTTTCTCTATGCTGATACTACTGTATGCATATTGACTGGTTACATCTGACTGCTTAATGCAATACTGCATGAAATTTGTTGTGTTCTGGTTTTCATGTCTCTGATGTTTTTTCTCAGGGAATTTCTTCTTTCTCTTCAGTCAGTCACTTGCTTAGCTATTTTTGGTTTGGGGAAAATATATTTTTGTTTCCATAGTAGTTCTCCTAAGGTGTCATTTGTGTATGTGGTCTTGTGTGAAATTTTTCATCATTTGGCCCCAATTATTCACAGATATTTATGTTCTTCAAGGATGCAAATCATACTAAAGGGAGCCGGTCGTGTTATAGAACATCATGGTTTCTAATAGCAGATATGAAATCTTTGCGGATTGCCAGTGTGTTAATGTAATCAATCTCTGTGTGATTCAGCAAGAAGAATAACCGTTCCTACAGGCTATATGTGAGAAACATTAGAGAAATAAGACTCTAGGAAGCAACATCATTGGCCTACCTAGATGTAGTTAAAAATAAGGAAAGCATGGAAATAGCCACAGAAGATGCGAATGTTGCAATCATTGTTTTACTAAAAAGCTGTAAGTAAACAGTGATGCTTTATAGCCACATATGGGAACCCAGGTTCTTACAATACTGTTTCTGTATTTTATTGTTAAAAAACATTGCAATTGTCTTACTTTTGCCAGTATTGTGGGTGCAAGGCTATAATGAGAGTGAAACCATTGAAGTTTGCTGATAGAATGATTCATGGTTGCAGCTGTTCAGTAACATGACTGTTTAAATAAATTCTAATATGTTTCTGCTTAAAAATTTTTTCATAAATGATGCTGTAGCAGCATGGTTTCTAGAAAGGTACTGTCTCAGCAGTCTTGTGAAAGTGTGCTTTATACGGTGCACTTATATGAAACCCAATAGAACGCTTGTGCTAGAAAGGAAAAATGGAAGGCTGACGTGATTAATTAAATGGATTTTTCTTTGGAGGAAAATAAAGGTGCGTAGGATAGGGCTAATTGAGAGCAGTGTTTTCATAAGTGCTTATATTTTATTTCACAG
Seq C2 exon
GAAAGCCAGGAACAGATCCTAATTCAGCAGCATGGGCAGCTTACTATGCTCACTACTATCAGCAGCAAGCACAGCCACCACCTGCAGCCCCTCCTGGTGGACCAGCTACAACCCAAACCAACGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.909
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]